RetrogeneDB ID: | retro_ocun_450 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:55933716..55934132(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSOCUG00000008933 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 50.34 % |
Parental protein coverage: | 78.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | CLLCTGSSSGATAPDS-LTMYACSKFVSTPS-LARSTSQLLSRPLSAVVLKRPEPLTDEVPYSVAAPCPL |
CLLCTG.S..AT.P...L...ACS.F.ST.S.L.RS.SQLLS.P.S.V..................P... | |
Retrocopy | CLLCTGNS*LATVPFC<LKKFACSTFISTFS<LVRSPSQLLSLPPSTVTCNSWRQMRTSSAWQPHIPIFT |
Parental | TPLLQSRSFQTSVVSRDIDTAAKFIG-AGAATVGVAGSGAG-IGTVFGSLIIGYARNPSLKQQLFSYAIL |
.P.LQ....QTS...RD.D.AAK..G.AG.A.VGV.G.GAG.I.TVFG....G.ARNPS..QQ.FS..IL | |
Retrocopy | CPHLQ---LQTSPIARDPDRAAKLLG<AGSAMVGVSGPGAG<IETVFGNQPTGDARNPSWRQQCFSRTIL |
Parental | GFALSEA |
.FA..EA | |
Retrocopy | FFAHWEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 84 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 179 .20 RPM |
SRP017611_liver | 0 .00 RPM | 40 .16 RPM |