Parental gene: | H3F3C, ENSPTRG00000009655 |
| Aliases: | None |
| Description: | Histone H3 [Source:UniProtKB/TrEMBL;Acc:G2HIR8] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 17:74729886..74733221(-) |
>ENSPTRG00000009655
ATGGCCCGAACTAAGCAGACTGCTCGTAAATCCACCGGTGGGAAAGCCCCCCGCAAACAGCTGGCCACGAAAGCCGCCAG
GAAAAGCGCTCCCTCTACCGGCGGGGTGAAGAAGCCTCATCGCTACAGGCCCGGGACCGTGGCGCTTCGAGAGATTCGTC
GTTATCAGAAGTCGACCGAGCTGCTCATCCGGAAGCTGCCCTTCCAGAGATTGGTGAGGGAGATCGCGCAGGATTTCAAA
ACCGACCTGAGGTTTCAGAGCGCAGCCATCGGTGCGCTGCAGGAGGCTAGCGAAGCGTACCTGGTGGGTCTGTTCGAAGA
TACCAACCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGGG
AGAGAGCTTAA
ATGGCCCGAACTAAGCAGACTGCTCGTAAATCCACCGGTGGGAAAGCCCCCCGCAAACAGCTGGCCACGAAAGCCGCCAG
GAAAAGCGCTCCCTCTACCGGCGGGGTGAAGAAGCCTCATCGCTACAGGCCCGGGACCGTGGCGCTTCGAGAGATTCGTC
GTTATCAGAAGTCGACCGAGCTGCTCATCCGGAAGCTGCCCTTCCAGAGATTGGTGAGGGAGATCGCGCAGGATTTCAAA
ACCGACCTGAGGTTTCAGAGCGCAGCCATCGGTGCGCTGCAGGAGGCTAGCGAAGCGTACCTGGTGGGTCTGTTCGAAGA
TACCAACCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGGG
AGAGAGCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 121 .81 RPM |
| SRP007412_cerebellum | 340 .56 RPM |
| SRP007412_heart | 83 .18 RPM |
| SRP007412_kidney | 177 .83 RPM |
| SRP007412_liver | 141 .18 RPM |
| SRP007412_testis | 690 .05 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000012702 | ortholog_one2many | 10 retrogenes | |
| Equus caballus | ENSECAG00000006904 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000016948 | ortholog_one2many | 1 retrogene | |
| Latimeria chalumnae | ENSLACG00000004118 | possible_ortholog | 1 retrogene | |
| Microcebus murinus | ENSMICG00000002139 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000008636 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000002045 | within_species_paralog | 20 retrogenes |
retro_ptro_1045, retro_ptro_1704, retro_ptro_1770, retro_ptro_1867, retro_ptro_1954, retro_ptro_2098, retro_ptro_2183, retro_ptro_2228, retro_ptro_2229, retro_ptro_2230, retro_ptro_2232, retro_ptro_2233, retro_ptro_2363, retro_ptro_279, retro_ptro_2834, retro_ptro_2936, retro_ptro_2978, retro_ptro_300, retro_ptro_3111, retro_ptro_3164,
|
| Tupaia belangeri | ENSTBEG00000016171 | ortholog_one2one | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_631 | 72.55 | 73.53 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_695 | 96.32 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_830 | 97.79 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_1742 | 64.15 | 77.21 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_1915 | 86.36 | 80.15 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_2009 | 94.89 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_2227 | 82.35 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_2231 | 72.50 | 86.76 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ptro_2234 | 71.30 | 84.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ptro_2238 | 63.11 | 88.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_ptro_2640 | 58.88 | 78.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_ptro_2879 | 74.19 | 91.18 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000009655 retrocopies