RetrogeneDB ID: | retro_ecab_916 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 6:84399900..84400230(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000006904 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 100. % |
Parental protein coverage: | 80.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEA |
RKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEA | |
Retrocopy | RKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEA |
Parental | SEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
SEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA | |
Retrocopy | SEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 34 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 28 .20 RPM |
SRP021940_embryo | 1 .38 RPM | 103 .49 RPM |
SRP021940_placental_villous | 0 .53 RPM | 40 .56 RPM |
SRP021940_synovial_membrane | 0 .58 RPM | 33 .99 RPM |
SRP021940_testis | 0 .51 RPM | 49 .81 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012702 | 10 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024843 | 2 retrocopies | |
Equus caballus | ENSECAG00000006904 | 1 retrocopy |
retro_ecab_916 ,
|
Equus caballus | ENSECAG00000016948 | 1 retrocopy | |
Homo sapiens | ENSG00000132475 | 11 retrocopies | |
Latimeria chalumnae | ENSLACG00000004118 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008083 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000002139 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004555 | 4 retrocopies | |
Oreochromis niloticus | ENSONIG00000019975 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000008636 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009655 | 12 retrocopies | |
Tupaia belangeri | ENSTBEG00000016171 | 7 retrocopies |