Parental gene:

ENSECAG00000006904

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:30:7472000..7478535(-)


>ENSECAG00000006904
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCGACCGGTGGTAAAGCCCCGAGGAAGCAGCTGGCTACAAAAGCCGCTCG
CAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCACTCCGTGAAATTAGAC
GTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTCAAA
ACAGATCTGCGCTTCCAGAGCGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGA
CACCAACCTGTGTGCTATCCATGCCAAACGTGTAACGATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAG
AACGTGCTTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 33 .99 RPM
SRP021940_embryo 103 .49 RPM
SRP021940_cerebellum 28 .20 RPM
SRP021940_testis 49 .81 RPM
SRP021940_placental_villous 40 .56 RPM
SRP021940_articular_cartilage 34 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000012702 ortholog_many2many 10 retrogenes
retro_cjac_145, retro_cjac_198, retro_cjac_201, retro_cjac_224, retro_cjac_235, retro_cjac_238, retro_cjac_307, retro_cjac_334, retro_cjac_366, retro_cjac_68,
Dasypus novemcinctus ENSDNOG00000024843 possible_ortholog 2 retrogenes
retro_dnov_1624, retro_dnov_775,
Equus caballus ENSECAG00000016948 within_species_paralog 1 retrogene
retro_ecab_266,
Homo sapiens ENSG00000132475 possible_ortholog 11 retrogenes
retro_hsap_1212, retro_hsap_1552, retro_hsap_2180, retro_hsap_24, retro_hsap_2971, retro_hsap_3231, retro_hsap_3294, retro_hsap_3299, retro_hsap_389, retro_hsap_4236, retro_hsap_911,
Latimeria chalumnae ENSLACG00000004118 possible_ortholog 1 retrogene
retro_lcha_104,
Loxodonta africana ENSLAFG00000008083 possible_ortholog 3 retrogenes
retro_lafr_837, retro_lafr_959, retro_lafr_99,
Microcebus murinus ENSMICG00000002139 ortholog_one2many 2 retrogenes
retro_mmur_36, retro_mmur_371,
Mustela putorius furo ENSMPUG00000004555 possible_ortholog 4 retrogenes
retro_mputfur_389, retro_mputfur_82, retro_mputfur_99, retro_mputfur_990,
Oreochromis niloticus ENSONIG00000019975 possible_ortholog 5 retrogenes
retro_onil_41, retro_onil_46, retro_onil_56, retro_onil_60, retro_onil_63,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Pan troglodytes ENSPTRG00000009655 ortholog_one2many 12 retrogenes
retro_ptro_1742, retro_ptro_1915, retro_ptro_2009, retro_ptro_2227, retro_ptro_2231, retro_ptro_2234, retro_ptro_2238, retro_ptro_2640, retro_ptro_2879, retro_ptro_631, retro_ptro_695, retro_ptro_830,
Tupaia belangeri ENSTBEG00000016171 ortholog_one2many 7 retrogenes
retro_tbel_3459, retro_tbel_3605, retro_tbel_3824, retro_tbel_3856, retro_tbel_4243, retro_tbel_4350, retro_tbel_674,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_916 100.00 80.88
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Download FASTA sequences of all ENSECAG00000006904 retrocopies