RetrogeneDB ID: | retro_ecab_266 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 11:42589674..42590085(-) | ||
Located in intron of: | ENSECAG00000020083 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000016948 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.02 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR |
MA.TKQT..KSTG.KAPRKQLATKAA.KS.P.TG.VKKPH.Y.PGT..L.EIRRY.KS.ELLI.KLPFQ. | |
Retrocopy | MAGTKQTGHKSTGSKAPRKQLATKAACKSVPPTGRVKKPHCYKPGTEVLCEIRRYLKSPELLIDKLPFQH |
Parental | LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL-ARRIRGERA |
LVREIAQDFKTDL.FQSAAIGALQEASEAYLV.LFEDTNLCAIHAK.V..MPKDIQL.AR.I.GE.A | |
Retrocopy | LVREIAQDFKTDLCFQSAAIGALQEASEAYLVCLFEDTNLCAIHAKCVMMMPKDIQLAARHIHGECA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .24 RPM | 240 .02 RPM |
SRP021940_cerebellum | 1 .56 RPM | 209 .75 RPM |
SRP021940_embryo | 1 .05 RPM | 374 .54 RPM |
SRP021940_placental_villous | 1 .64 RPM | 293 .96 RPM |
SRP021940_synovial_membrane | 1 .24 RPM | 210 .91 RPM |
SRP021940_testis | 0 .51 RPM | 786 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012702 | 10 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024843 | 2 retrocopies | |
Equus caballus | ENSECAG00000006904 | 1 retrocopy | |
Equus caballus | ENSECAG00000016948 | 1 retrocopy |
retro_ecab_266 ,
|
Homo sapiens | ENSG00000132475 | 11 retrocopies | |
Latimeria chalumnae | ENSLACG00000004118 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008083 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000002139 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004555 | 4 retrocopies | |
Oreochromis niloticus | ENSONIG00000019975 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000008636 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009655 | 12 retrocopies | |
Tupaia belangeri | ENSTBEG00000016171 | 7 retrocopies |