Parental gene: | ENSCJAG00000012702 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 19:17724449..17733135(-) |
>ENSCJAG00000012702
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCTACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCG
CAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCACTCCGTGAAATTAGAC
GTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAA
ACAGATCTGCGCTTCCAGAGCGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGA
CACCAACCTTTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGATATCCAGCTAGCACGCCGCATACGTGGAG
AGCGTGCTTAA
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCTACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCG
CAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCACTCCGTGAAATTAGAC
GTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAA
ACAGATCTGCGCTTCCAGAGCGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGA
CACCAACCTTTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGATATCCAGCTAGCACGCCGCATACGTGGAG
AGCGTGCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 11 .11 RPM |
| SRP051959_skeletal_muscle | 6 .16 RPM |
| SRP051959_lymph_node | 12 .81 RPM |
| SRP051959_lung | 13 .16 RPM |
| SRP051959_liver | 7 .99 RPM |
| SRP051959_kidney | 9 .07 RPM |
| SRP051959_heart | 7 .95 RPM |
| SRP051959_colon | 17 .53 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000024843 | possible_ortholog | 2 retrogenes | |
| Equus caballus | ENSECAG00000006904 | ortholog_many2many | 1 retrogene | |
| Equus caballus | ENSECAG00000016948 | ortholog_many2many | 1 retrogene | |
| Homo sapiens | ENSG00000132475 | possible_ortholog | 11 retrogenes | |
| Latimeria chalumnae | ENSLACG00000004118 | possible_ortholog | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000008083 | possible_ortholog | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000002139 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000004555 | possible_ortholog | 4 retrogenes | |
| Oreochromis niloticus | ENSONIG00000019975 | possible_ortholog | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000008636 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000009655 | ortholog_one2many | 12 retrogenes | |
| Tupaia belangeri | ENSTBEG00000016171 | ortholog_one2many | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_68 | 95.59 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_145 | 99.26 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_198 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_201 | 98.53 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_224 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_235 | 98.53 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_238 | 95.59 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_307 | 95.59 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cjac_334 | 97.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_cjac_366 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000012702 retrocopies