RetrogeneDB ID: | retro_tbel_4243 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_73104:4065..4474(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000000221 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3B | ||
Ensembl ID: | ENSTBEG00000016171 | ||
Aliases: | None | ||
Description: | H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765] |
Percent Identity: | 75.18 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR |
MA..K.TA.KSTGGKA.RKQLATKA...SAPSTG.VKKPH.Y.P..VAL..IRRYQKSTELLI.KLPFQ. | |
Retrocopy | MAPAKLTAGKSTGGKAARKQLATKAVCTSAPSTGRVKKPHCY*PESVALGKIRRYQKSTELLICKLPFQS |
Parental | LVREIAQDFKT-DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
L.R.IAQDF.T..L.FQSAAIGALQ...EAYLVGL.EDTNL.AI.AKRV..MPKD.QLAR.IR.ERA | |
Retrocopy | LLRKIAQDFNT>NLHFQSAAIGALQDTNEAYLVGLSEDTNLRAIYAKRVPMMPKDSQLARCIRVERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012702 | 10 retrocopies | |
Equus caballus | ENSECAG00000006904 | 1 retrocopy | |
Equus caballus | ENSECAG00000016948 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000004118 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002139 | 2 retrocopies | |
Oreochromis niloticus | ENSONIG00000019975 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000008636 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009655 | 12 retrocopies | |
Tupaia belangeri | ENSTBEG00000006177 | 13 retrocopies | |
Tupaia belangeri | ENSTBEG00000016171 | 7 retrocopies |
retro_tbel_3459, retro_tbel_3605, retro_tbel_3824, retro_tbel_3856, retro_tbel_4243 , retro_tbel_4350, retro_tbel_674,
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