Parental gene:

H3F3C, ENSLACG00000004118

Aliases:None
Description:Histone H3 [Source:UniProtKB/TrEMBL;Acc:H3A4Q6]
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH129843.1:109524..123049(+)


>ENSLACG00000004118
ATGGCTCGTACCAAGCAGACGGCTCGTAAGTCTACTGGTGGTAAGGCACCAAGGAAGCAGCTTGCAACAAAAGCTGCACG
TAAAAGTGCCCCATCTACCGGAGGGGTTAAGAAACCCCATCGTTACAGGCCGGGTACTGTAGCTCTTCGTGAAATCAGAC
GTTACCAGAAGTCCACTGAACTTCTGATCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAAATCGCTCAGGACTTCAAA
ACAGATCTGCGCTTCCAAAGCGCTGCTATTGGCGCTTTGCAGGAGGCAAGTGAAGCCTATCTGGTCGGCTTGTTTGAGGA
CACCAACCTGTGTGCTATTCACGCCAAGCGTGTGACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATCCGTGGTG
AACGTGCTTAA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 287 .43 RPM
DRP000627_kidney 86 .07 RPM
DRP000627_pelvic_fin 353 .48 RPM
DRP000627_pharynx 36 .67 RPM
DRP000627_gill 112 .42 RPM
DRP000627_tail_muscle 32 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000012702 possible_ortholog 10 retrogenes
retro_cjac_145, retro_cjac_198, retro_cjac_201, retro_cjac_224, retro_cjac_235, retro_cjac_238, retro_cjac_307, retro_cjac_334, retro_cjac_366, retro_cjac_68,
Dasypus novemcinctus ENSDNOG00000024843 ortholog_one2one 2 retrogenes
retro_dnov_1624, retro_dnov_775,
Equus caballus ENSECAG00000006904 possible_ortholog 1 retrogene
retro_ecab_916,
Equus caballus ENSECAG00000016948 possible_ortholog 1 retrogene
retro_ecab_266,
Homo sapiens ENSG00000132475 ortholog_one2one 11 retrogenes
retro_hsap_1212, retro_hsap_1552, retro_hsap_2180, retro_hsap_24, retro_hsap_2971, retro_hsap_3231, retro_hsap_3294, retro_hsap_3299, retro_hsap_389, retro_hsap_4236, retro_hsap_911,
Loxodonta africana ENSLAFG00000008083 ortholog_one2one 3 retrogenes
retro_lafr_837, retro_lafr_959, retro_lafr_99,
Microcebus murinus ENSMICG00000002139 possible_ortholog 2 retrogenes
retro_mmur_36, retro_mmur_371,
Mustela putorius furo ENSMPUG00000004555 ortholog_one2one 4 retrogenes
retro_mputfur_389, retro_mputfur_82, retro_mputfur_99, retro_mputfur_990,
Oreochromis niloticus ENSONIG00000019975 possible_ortholog 5 retrogenes
retro_onil_41, retro_onil_46, retro_onil_56, retro_onil_60, retro_onil_63,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Pan troglodytes ENSPTRG00000009655 possible_ortholog 12 retrogenes
retro_ptro_1742, retro_ptro_1915, retro_ptro_2009, retro_ptro_2227, retro_ptro_2231, retro_ptro_2234, retro_ptro_2238, retro_ptro_2640, retro_ptro_2879, retro_ptro_631, retro_ptro_695, retro_ptro_830,
Tupaia belangeri ENSTBEG00000016171 possible_ortholog 7 retrogenes
retro_tbel_3459, retro_tbel_3605, retro_tbel_3824, retro_tbel_3856, retro_tbel_4243, retro_tbel_4350, retro_tbel_674,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_104 87.97 97.06
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Download FASTA sequences of all ENSLACG00000004118 retrocopies