RetrogeneDB ID: | retro_ptro_2978 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | GL390121.1:1138..1483(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3C | ||
Ensembl ID: | ENSPTRG00000002045 | ||
Aliases: | None | ||
Description: | Pan troglodytes histone cluster 1, H3a (HIST1H3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001098568] |
Percent Identity: | 69.57 % |
Parental protein coverage: | 84.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE |
KQ..RK.T...A.RK.LATKAA.K.AP.TGG.KKPH.YRPGT.AL..IR..QKST.LL.RKL.FQRLVRE | |
Retrocopy | KQNTRKATTSEALRKPLATKAAGKRAPPTGGIKKPHGYRPGTLALCKIRK*QKSTQLLLRKLHFQRLVRE |
Parental | IAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT |
I.Q....DLRFQSA...ALQE.S.A.LV.LFEDTNLCAIHA..VT | |
Retrocopy | ITQVISPDLRFQSATTSALQEPSKAFLVRLFEDTNLCAIHARHVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .72 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .50 RPM |
SRP007412_heart | 0 .00 RPM | 0 .61 RPM |
SRP007412_kidney | 0 .00 RPM | 1 .10 RPM |
SRP007412_liver | 0 .00 RPM | 0 .69 RPM |
SRP007412_testis | 0 .00 RPM | 1 .79 RPM |