Parental gene:

H3F3C, ENSPTRG00000002045

Aliases:None
Description:Pan troglodytes histone cluster 1, H3a (HIST1H3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001098568]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:205237042..205247630(+)


>ENSPTRG00000002045
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCGACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCG
CAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCGCTCCGTGAAATTAGAC
GTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAA
ACAGATCTGCGCTTCCAGAGCGCAGCTATCGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGA
CACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAG
AACGTGCTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 5 .72 RPM
SRP007412_cerebellum 0 .50 RPM
SRP007412_heart 0 .61 RPM
SRP007412_kidney 1 .10 RPM
SRP007412_liver 0 .69 RPM
SRP007412_testis 1 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014588 ortholog_one2one 7 retrogenes
retro_amel_1023, retro_amel_1026, retro_amel_144, retro_amel_570, retro_amel_687, retro_amel_711, retro_amel_903,
Bos taurus ENSBTAG00000024561 possible_ortholog 3 retrogenes
retro_btau_156, retro_btau_204, retro_btau_47,
Canis familiaris ENSCAFG00000004916 possible_ortholog 2 retrogenes
retro_cfam_1117, retro_cfam_622,
Canis familiaris ENSCAFG00000016119 possible_ortholog 4 retrogenes
retro_cfam_168, retro_cfam_1845, retro_cfam_650, retro_cfam_673,
Erinaceus europaeus ENSEEUG00000013796 possible_ortholog 1 retrogene
retro_eeur_2,
Felis catus ENSFCAG00000003617 possible_ortholog 4 retrogenes
retro_fcat_1085, retro_fcat_1953, retro_fcat_592, retro_fcat_830,
Felis catus ENSFCAG00000030424 possible_ortholog 5 retrogenes
retro_fcat_1251, retro_fcat_1532, retro_fcat_1533, retro_fcat_2011, retro_fcat_674,
Gadus morhua ENSGMOG00000014306 possible_ortholog 1 retrogene
retro_gmor_9,
Macaca mulatta ENSMMUG00000031483 possible_ortholog 9 retrogenes
retro_mmul_108, retro_mmul_147, retro_mmul_201, retro_mmul_213, retro_mmul_215, retro_mmul_286, retro_mmul_337, retro_mmul_346, retro_mmul_7,
Monodelphis domestica ENSMODG00000005983 ortholog_one2one 3 retrogenes
retro_mdom_1037, retro_mdom_1132, retro_mdom_175,
Mustela putorius furo ENSMPUG00000013811 ortholog_one2one 3 retrogenes
retro_mputfur_1159, retro_mputfur_787, retro_mputfur_881,
Nomascus leucogenys ENSNLEG00000001577 possible_ortholog 2 retrogenes
retro_nleu_25, retro_nleu_35,
Otolemur garnettii ENSOGAG00000024312 possible_ortholog 11 retrogenes
retro_ogar_1086, retro_ogar_1790, retro_ogar_1863, retro_ogar_2364, retro_ogar_2463, retro_ogar_2581, retro_ogar_2746, retro_ogar_3415, retro_ogar_478, retro_ogar_842, retro_ogar_955,
Otolemur garnettii ENSOGAG00000025933 possible_ortholog 14 retrogenes
retro_ogar_1285, retro_ogar_1364, retro_ogar_1449, retro_ogar_1575, retro_ogar_1576, retro_ogar_2200, retro_ogar_2316, retro_ogar_2449, retro_ogar_2634, retro_ogar_3235, retro_ogar_42, retro_ogar_733, retro_ogar_937, retro_ogar_952,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Pan troglodytes ENSPTRG00000009655 within_species_paralog 12 retrogenes
retro_ptro_1742, retro_ptro_1915, retro_ptro_2009, retro_ptro_2227, retro_ptro_2231, retro_ptro_2234, retro_ptro_2238, retro_ptro_2640, retro_ptro_2879, retro_ptro_631, retro_ptro_695, retro_ptro_830,
Pteropus vampyrus ENSPVAG00000008459 possible_ortholog 2 retrogenes
retro_pvam_218, retro_pvam_52,
Tursiops truncatus ENSTTRG00000015889 ortholog_one2one 7 retrogenes
retro_ttru_1094, retro_ttru_1306, retro_ttru_18, retro_ttru_451, retro_ttru_738, retro_ttru_814, retro_ttru_92,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_279 85.29 100.00
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2. retro_ptro_300 77.37 100.00
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3. retro_ptro_1045 78.49 66.91
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4. retro_ptro_1704 100.00 100.00
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5. retro_ptro_1770 73.04 82.35
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6. retro_ptro_1867 75.61 89.71
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7. retro_ptro_1954 86.49 80.88
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8. retro_ptro_2098 97.06 100.00
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9. retro_ptro_2183 84.29 100.00
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10. retro_ptro_2228 61.29 90.44
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11. retro_ptro_2229 80.88 100.00
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12. retro_ptro_2230 61.31 100.00
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13. retro_ptro_2232 82.09 98.53
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14. retro_ptro_2233 61.31 100.00
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15. retro_ptro_2363 66.36 80.15
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16. retro_ptro_2834 63.44 65.44
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17. retro_ptro_2936 81.45 88.24
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18. retro_ptro_2978 69.57 84.56
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19. retro_ptro_3111 93.33 99.26
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20. retro_ptro_3164 94.89 100.00
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Download FASTA sequences of all ENSPTRG00000002045 retrocopies