RetrogeneDB ID:

retro_mmur_371

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_266:88069..88453(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMICG00000002139
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mmur_371
GCTCACACACAGCAGGGTGCCCACAAATCGGCTGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTTGCAA
GAGTGCGCCCTCCACCGGAGGGGTGAAGAGACCTCATCGCTACAGGCCTTGTCACAGTGGCACTCCCTGACGTTATCAGA
CGTTAGCAGAAGTCCGCTGAACTTCTGATTCACAAACCTCTTTTCCAGCATCTGGTGCAAGAAATTGCTCAGGACTTCAG
AACAGATCTGCGCTTCCAGAGCGCAGCCACTGGTGCTGTGCAGGAGGCAAGTGAGGCCTATCGGTCGGCCTTTTCTTAGA
CACCGATCTGTGTGCTGCCCATGCCAAACGTGTGACAGTTGTGCCAAAAGACATCCAGCTAGCA

ORF - retro_mmur_371 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.69 %
Parental protein coverage: 93.38 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRP-GTVALRE-IRRYQKSTELLIRKLPFQ
A.T.Q.A.KS.GGKAPRKQLATKAA.KSAPSTGGVK.PHRYRP..TVAL...IRR.QKS.ELLI.K..FQ
RetrocopyAHTQQGAHKSAGGKAPRKQLATKAACKSAPSTGGVKRPHRYRP>VTVALPDVIRR*QKSAELLIHKPLFQ
ParentalRLVREIAQDFKTDLRFQSAAIGALQEASEAY-LVGLFEDTNLCAIHAKRVTIMPKDIQLA
.LV.EIAQDF.TDLRFQSAA.GA.QEASEAY..VGLF.DT.LCA.HAKRVT..PKDIQLA
RetrocopyHLVQEIAQDFRTDLRFQSAATGAVQEASEAY<SVGLFLDTDLCAAHAKRVTVVPKDIQLA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_371 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_371 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 66 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG0000001270210 retrocopies
Dasypus novemcinctus ENSDNOG000000248432 retrocopies
Equus caballus ENSECAG000000069041 retrocopy
Equus caballus ENSECAG000000169481 retrocopy
Homo sapiens ENSG0000013247511 retrocopies
Latimeria chalumnae ENSLACG000000041181 retrocopy
Loxodonta africana ENSLAFG000000080833 retrocopies
Microcebus murinus ENSMICG00000002139 2 retrocopies
retro_mmur_36, retro_mmur_371 ,
Microcebus murinus ENSMICG000000104696 retrocopies
Mustela putorius furoENSMPUG000000045554 retrocopies
Oreochromis niloticus ENSONIG000000199755 retrocopies
Pongo abelii ENSPPYG000000086361 retrocopy
Pan troglodytes ENSPTRG0000000965512 retrocopies
Tupaia belangeri ENSTBEG000000161717 retrocopies



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