RetrogeneDB ID: | retro_amel_959 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192769.1:1091182..1092547(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EWSR1 | ||
Ensembl ID: | ENSAMEG00000008298 | ||
Aliases: | None | ||
Description: | EWS RNA-binding protein 1 [Source:HGNC Symbol;Acc:3508] |
Percent Identity: | 81.92 % |
Parental protein coverage: | 68.84 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 4 |
Parental | PTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQ |
PTSYD.SSYSQQNTYGQPSSYG.QSSYGQ.SSYGQQPPTSYPPQTGSYSQAPS.YSQQSSSYGQQSSF.Q | |
Retrocopy | PTSYD*SSYSQQNTYGQPSSYGEQSSYGQHSSYGQQPPTSYPPQTGSYSQAPSPYSQQSSSYGQQSSF*Q |
Parental | DHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPM |
DHPSSM..YGQESGGFS.PGEN...SGPDNRGRGRGGFD.GGM.RGG.GG...GMGAGERGGF.KP...M | |
Retrocopy | DHPSSMSIYGQESGGFSRPGENGNVSGPDNRGRGRGGFDCGGMCRGGQGGEHSGMGAGERGGFSKPDRSM |
Parental | DEGPDLDLGPPVDPDEDCDNSAIYVQGLNDSVTLDDLADFFKQCGVVRMNKRTGQPMIHIYLDKETGKPK |
.EGPD.DLGPPVDPDED.DNSA.YVQG.NDSV.LDDLADF.KQCGVV..NKRTG.PMIH.YLDKETGKPK | |
Retrocopy | VEGPDIDLGPPVDPDEDSDNSAVYVQG*NDSVILDDLADFVKQCGVVKINKRTG*PMIHVYLDKETGKPK |
Parental | GDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSFAR-KKPPMNSMRGAMPPREGRGMPPPLRGGPGGPGG |
G.ATVSYEDPPTAK.A.EWFDGKDFQGSK.KVS.AR.KKP.MNSM.G.MPP.EGRGM..PL.GGPGGPGG | |
Retrocopy | GVATVSYEDPPTAKVAMEWFDGKDFQGSKFKVSLAR<KKPLMNSMQGGMPPCEGRGMLQPLCGGPGGPGG |
Parental | PGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGG-NVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKP |
PGGPMG...GRGGDRG.FPPRGPR.S.GNP..GG.NVQH.AGDWQCP..GCGNQN.AWR.EC.QC.A.KP | |
Retrocopy | PGGPMGHRRGRGGDRGSFPPRGPRDS*GNPPRGG>NVQH*AGDWQCPSLGCGNQN*AWRAECKQCEALKP |
Parental | EGFLPPPFPPP-GGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGR-RG |
EGFLP.PF..P.G.D.GRGGPGGMRGGRG.LMD.GGPGGMFR.G.GG.RGGF.GG.GMD.GGFGGGR.RG | |
Retrocopy | EGFLPSPFLHP>GSDHGRGGPGGMRGGRGSLMDHGGPGGMFRSGHGGERGGFHGGQGMD*GGFGGGR<RG |
Parental | GPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRP |
GPGGPPGPLMEQMGGRRGG.GGPGKM.K..HRQE.RD.P | |
Retrocopy | GPGGPPGPLMEQMGGRRGGHGGPGKMEKDQHRQELRDQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008298 | 2 retrocopies |
retro_amel_191, retro_amel_959 ,
|
Canis familiaris | ENSCAFG00000012160 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000019987 | 4 retrocopies | |
Homo sapiens | ENSG00000182944 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012212 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008703 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012058 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008679 | 1 retrocopy | |
Mus musculus | ENSMUSG00000009079 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004432 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000011684 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014218 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023177 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011881 | 1 retrocopy |