RetrogeneDB ID: | retro_btau_1782 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:128408666..128409038(+) | ||
Located in intron of: | ENSBTAG00000000419 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HINT1 | ||
Ensembl ID: | ENSBTAG00000010959 | ||
Aliases: | None | ||
Description: | Histidine triad nucleotide-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P62958] |
Percent Identity: | 98.39 % |
Parental protein coverage: | 98.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DEIAKAQVARPGGDTIFGKIIRKEIPAKIIYEDDQCLAFHDISPQAPTHFLVIPKKYISQISAAEDDDES |
DEI.KAQVARPGGDTIFGKIIR.EIPAKIIYEDDQCLAFHDISPQAPTHFLVIPKKYISQISAAEDDDES | |
Retrocopy | DEITKAQVARPGGDTIFGKIIRREIPAKIIYEDDQCLAFHDISPQAPTHFLVIPKKYISQISAAEDDDES |
Parental | LLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG |
LLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG | |
Retrocopy | LLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 1 .37 RPM | 34 .97 RPM |
ERP005899_muscle | 0 .32 RPM | 79 .71 RPM |
SRP017611_brain | 0 .32 RPM | 21 .47 RPM |
SRP017611_kidney | 2 .73 RPM | 71 .66 RPM |
SRP017611_liver | 0 .23 RPM | 22 .43 RPM |
SRP030211_testis | 0 .28 RPM | 39 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017774 | 4 retrocopies | |
Bos taurus | ENSBTAG00000010959 | 5 retrocopies | |
Bos taurus | ENSBTAG00000011444 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000032152 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014398 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000010127 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011967 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005368 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000001091 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000028727 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000011639 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006607 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000000622 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005834 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000014264 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027920 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000008653 | 4 retrocopies |