RetrogeneDB ID: | retro_rnor_98 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:158200352..158200733(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000005630 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hint1 | ||
Ensembl ID: | ENSRNOG00000000622 | ||
Aliases: | Hint1, Pkci, Prkci | ||
Description: | Histidine triad nucleotide-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P62959] |
Percent Identity: | 99.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADEIAKAQVAQPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVADDDD |
MADEIAKAQVAQPGGDTIFGKIIRKEIPAKIIF.DDRCLAFHDISPQAPTHFLVIPKKHISQISVADDDD | |
Retrocopy | MADEIAKAQVAQPGGDTIFGKIIRKEIPAKIIFKDDRCLAFHDISPQAPTHFLVIPKKHISQISVADDDD |
Parental | ESLLGHLMIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVLGGRQMNWPPG |
ESLLGHLMIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVLGGRQMNWPPG | |
Retrocopy | ESLLGHLMIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVLGGRQMNWPPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 38 .39 RPM |
SRP017611_kidney | 0 .42 RPM | 78 .71 RPM |
SRP017611_liver | 0 .13 RPM | 34 .09 RPM |