RetrogeneDB ID: | retro_itri_177 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | AGTP01138943.1:6942..7314(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000027920 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.04 % |
Parental protein coverage: | 98.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MADEIAKAQVAQPSDGDTIFEKIIRKEIPAK-IIFEDDQCLAFHDIA-PQAPTHFLVVPKKHITQIS-AA |
M...IAK.QV....DG.T.F.KI..KEIP.K.IIFED...LA..D...P.A.T.FL.VP.K...QIS.AA | |
Retrocopy | MTGDIAKSQVTW-TDGSTMFGKITYKEIPEK<IIFEDE*GLASCDLS<PEALTCFLEVPQKQVLQISTAA |
Parental | EDDDENLLGHLMIVGKKCAADLGLKKGYRMVVNEGADGGQSVYHVHLHVLGGRQ-MNWP |
.D.D...LGH..I.G.KC..DLGLKK.Y.M.VNE.......V.HVH.HVLGG.Q..NWP | |
Retrocopy | VDADKSILGHFKIAGRKCDFDLGLKKAY*MLVNEVSGVKENVHHVHVHVLGGWQ<RNWP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |