RetrogeneDB ID: | retro_amel_511 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192481.1:1914470..1914867(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000000098 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HINT1 | ||
Ensembl ID: | ENSAMEG00000017774 | ||
Aliases: | None | ||
Description: | histidine triad nucleotide binding protein 1 [Source:HGNC Symbol;Acc:4912] |
Percent Identity: | 73.33 % |
Parental protein coverage: | 95.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SPGRSRGRVAEMADEIAKAQAARPGGDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKH |
SP.....R.AE.ADEI.KAQ..RPG..TIF.KII.KEIPAKIIFED.QCLA.HDISPQAPTH.LVIPKKH | |
Retrocopy | SPQGLHRREAEGADEIIKAQTPRPGHHTIFRKIICKEIPAKIIFEDNQCLALHDISPQAPTHLLVIPKKH |
Parental | ISQISVAEDDDESLLG-HLMIVGKKCAAD-LGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMN |
ISQISVAE.DDE.LLG.HL.IV..KCAAD..GLKKGYRM..NE.S.GG..V.HV.LHVL.G.QM. | |
Retrocopy | ISQISVAEGDDENLLG<HLIIVVMKCAAD<SGLKKGYRMAENEVSSGGLCVRHVQLHVLEGGQMS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017774 | 4 retrocopies | |
Bos taurus | ENSBTAG00000010959 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000032152 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014398 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000010127 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011967 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005368 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000001091 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000028727 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000011639 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006607 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000000622 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005834 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000014264 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027920 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000008653 | 4 retrocopies |