Parental gene:

ENSCJAG00000014398

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:74454505..74464244(+)


>ENSCJAG00000014398
ATGGCAGATGAGATCGCCAAGGCTCAGGTCGCTCGGCCTGGTGGCGACACGATCTTCGGGAAGATCATCCGCAAGGAAAT
CCCAGCCAAAATCATTTTTGAGGATGACCGGTGCCTTGCTTTCCACGACATTTCTCCTCAAGCACCAACACATTTTCTGG
TGATACCCAAGAAACATATATCCCAGATTTCTGCAGCAGAAGATGATGATGAAAGTCTTCTTGGACACTTAATGATTGTT
GGCAAGAAATGTGCTGCAGATCTGGGCCTGAATAAGGGTTACCGAATGGTAGTGAATGAAGGTTCAGATGGTGGACAGTC
TGTCTATCACGTTCATCTCCATGTTCTTGGAGGTCGGCAGATGCATTGGCCTCCTGGTTAA

Library Parental gene expression (RPM)
SRP051959_colon 19 .15 RPM
SRP051959_heart 13 .19 RPM
SRP051959_kidney 16 .24 RPM
SRP051959_liver 31 .82 RPM
SRP051959_lung 11 .34 RPM
SRP051959_lymph_node 12 .85 RPM
SRP051959_skeletal_muscle 17 .86 RPM
SRP051959_spleen 18 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017774 possible_ortholog 4 retrogenes
retro_amel_1426, retro_amel_1657, retro_amel_460, retro_amel_511,
Bos taurus ENSBTAG00000010959 possible_ortholog 5 retrogenes
retro_btau_1036, retro_btau_1149, retro_btau_1782, retro_btau_926, retro_btau_978,
Canis familiaris ENSCAFG00000032152 possible_ortholog 1 retrogene
retro_cfam_473,
Callithrix jacchus ENSCJAG00000010068 within_species_paralog 1 retrogene
retro_cjac_1343,
Equus caballus ENSECAG00000023180 ortholog_one2many 3 retrogenes
retro_ecab_264, retro_ecab_356, retro_ecab_550,
Erinaceus europaeus ENSEEUG00000008175 ortholog_one2many 1 retrogene
retro_eeur_582,
Echinops telfairi ENSETEG00000010127 ortholog_many2many 1 retrogene
retro_etel_1,
Homo sapiens ENSG00000169567 ortholog_one2many 1 retrogene
retro_hsap_3913,
Gorilla gorilla ENSGGOG00000011967 ortholog_many2many 1 retrogene
retro_ggor_89,
Macropus eugenii ENSMEUG00000005368 ortholog_one2many 2 retrogenes
retro_meug_1001, retro_meug_848,
Myotis lucifugus ENSMLUG00000001091 possible_ortholog 2 retrogenes
retro_mluc_1388, retro_mluc_2100,
Macaca mulatta ENSMMUG00000009985 ortholog_one2many 2 retrogenes
retro_mmul_1896, retro_mmul_759,
Monodelphis domestica ENSMODG00000028727 ortholog_many2many 3 retrogenes
retro_mdom_102, retro_mdom_1741, retro_mdom_286,
Mustela putorius furo ENSMPUG00000011639 possible_ortholog 4 retrogenes
retro_mputfur_1337, retro_mputfur_1376, retro_mputfur_45, retro_mputfur_93,
Mus musculus ENSMUSG00000020267 ortholog_one2many 1 retrogene
retro_mmus_718,
Nomascus leucogenys ENSNLEG00000012431 ortholog_one2many 1 retrogene
retro_nleu_2155,
Oryctolagus cuniculus ENSOCUG00000006607 ortholog_many2many 5 retrogenes
retro_ocun_1374, retro_ocun_214, retro_ocun_643, retro_ocun_821, retro_ocun_968,
Otolemur garnettii ENSOGAG00000008850 ortholog_one2many 2 retrogenes
retro_ogar_1028, retro_ogar_1599,
Procavia capensis ENSPCAG00000004737 ortholog_one2many 1 retrogene
retro_pcap_407,
Pongo abelii ENSPPYG00000015747 ortholog_one2many 2 retrogenes
retro_pabe_3189, retro_pabe_909,
Pan troglodytes ENSPTRG00000017206 ortholog_one2many 1 retrogene
retro_ptro_2661,
Rattus norvegicus ENSRNOG00000000622 ortholog_many2many 1 retrogene
retro_rnor_98,
Sarcophilus harrisii ENSSHAG00000005834 ortholog_many2many 2 retrogenes
retro_shar_113, retro_shar_301,
Sus scrofa ENSSSCG00000014264 possible_ortholog 2 retrogenes
retro_sscr_371, retro_sscr_894,
Ictidomys tridecemlineatus ENSSTOG00000027920 ortholog_many2many 4 retrogenes
retro_itri_1129, retro_itri_114, retro_itri_177, retro_itri_260,
Tursiops truncatus ENSTTRG00000008653 possible_ortholog 4 retrogenes
retro_ttru_1364, retro_ttru_1660, retro_ttru_217, retro_ttru_349,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_87 94.44 100.00
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2. retro_cjac_134 92.62 96.83
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3. retro_cjac_142 98.41 100.00
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Download FASTA sequences of all ENSCJAG00000014398 retrocopies