RetrogeneDB ID:

retro_ttru_217

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1578:282524..282887(-)
Located in intron of:ENSTTRG00000002767
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HINT1
Ensembl ID:ENSTTRG00000008653
Aliases:None
Description:histidine triad nucleotide binding protein 1 [Source:HGNC Symbol;Acc:4912]


Retrocopy-Parental alignment summary:






>retro_ttru_217
GCTAAGGCTCAGACTTCCTGGCCTGGTGATGACACGATTTTGGGGAAGATTATTCACAAGGAAATTCCAGCCAGAATCAT
TTATGTGGATGACCAGTGTCTCGCTTTCCATGACATTTCCCCTCAAGCACCAGCACATTTTCTGGTGATACCCAAGAAAC
ATATATCCCAGATTTCTGCAGCAGAAGATAATGGTGAAAGTCTTCTTGGACATTTAATGATTGTTGGCAAGAAATGTGCT
GCTGATCTAGGCCTGAAGAAGGGTTATCAAATGGTGGTGAATGAAGGTTCAGATTGGGGACAGTCTGTCTACCGTGTTCA
TCTCCATGTTCTTGGAGGTCGGCAGATGAATTGGCCTCCTGGT

ORF - retro_ttru_217 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.6 %
Parental protein coverage: 96.03 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAKAQAARPGGDTIFGKIIRKEIPAKIIYEDDQCLAFHDVSPQAPTHFLVIPKKHISQISAAEDDDESLLG
AKAQ...PG.DTI.GKII.KEIPA.IIY.DDQCLAFHD.SPQAP.HFLVIPKKHISQISAAED..ESLLG
RetrocopyAKAQTSWPGDDTILGKIIHKEIPARIIYVDDQCLAFHDISPQAPAHFLVIPKKHISQISAAEDNGESLLG
ParentalHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG
HLMIVGKKCAADLGLKKGY.MVVNEGSD.GQSVY.VHLHVLGGRQMNWPPG
RetrocopyHLMIVGKKCAADLGLKKGYQMVVNEGSDWGQSVYRVHLHVLGGRQMNWPPG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_217 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_217 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 45 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000177744 retrocopies
Bos taurus ENSBTAG000000109595 retrocopies
Canis familiaris ENSCAFG000000321521 retrocopy
Callithrix jacchus ENSCJAG000000143983 retrocopies
Echinops telfairi ENSETEG000000101271 retrocopy
Gorilla gorilla ENSGGOG000000119671 retrocopy
Macropus eugenii ENSMEUG000000053682 retrocopies
Myotis lucifugus ENSMLUG000000010912 retrocopies
Monodelphis domestica ENSMODG000000287273 retrocopies
Mustela putorius furoENSMPUG000000116394 retrocopies
Oryctolagus cuniculus ENSOCUG000000066075 retrocopies
Rattus norvegicus ENSRNOG000000006221 retrocopy
Sarcophilus harrisii ENSSHAG000000058342 retrocopies
Sus scrofa ENSSSCG000000142642 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000279204 retrocopies
Tursiops truncatus ENSTTRG00000008653 4 retrocopies
Tursiops truncatus ENSTTRG000000119321 retrocopy



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