RetrogeneDB ID: | retro_ocun_821 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:19021190..19021568(-) | ||
Located in intron of: | ENSOCUG00000016139 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HINT1 | ||
Ensembl ID: | ENSOCUG00000006607 | ||
Aliases: | HINT1, HINT | ||
Description: | histidine triad nucleotide binding protein 1 (HINT1), mRNA [Source:RefSeq mRNA;Acc:NM_001082623] |
Percent Identity: | 84.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDAD |
MADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDQCLAF..ISPQAPTHFLVIPKKHISQISAAEDAD | |
Retrocopy | MADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDQCLAFYYISPQAPTHFLVIPKKHISQISAAEDAD |
Parental | ESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG |
ESLLGHLMIVGKKCAADLG................QS.YHVHLHVLGGRQMNWPPG | |
Retrocopy | ESLLGHLMIVGKKCAADLGXXXXXXXXXXXXXXXXQSMYHVHLHVLGGRQMNWPPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 91 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 155 .38 RPM |
SRP017611_liver | 0 .15 RPM | 38 .69 RPM |