RetrogeneDB ID:

retro_shar_113

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL834640.1:1044607..1044988(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSSHAG00000012507
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSSHAG00000005834
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_shar_113
ATGACAGATGAGATCAGCAAACCTCATTGTACCCATCGAAGAGGAGATTCAATCTTTGGGAGAATAATTCGCAAGGAAGT
TCCAGCCAACATAATTTTCGAGGATGACCTATGTGTTGCTTTCCATGATGCTTGCCCCCAAGCTCCAATTCATTTCCTAG
TGGTACCAAGGAAACCCATTATGCAGATATCTTTAACAGAGGATGATGATGAAAGACTTCTTGGACACTTAATAATTGTT
GGCAAGAAATGTGCCAATGCTATGGGCCTGAAGAAGGGATACCGGATGGTGATCAACGAAGGTGCAGATGGTGGACAAAC
TGTCTTTCATATCCATCTCCATGTACTGGGAGGCCGTCAGATGAAATGGCCTCCTGGATAA

ORF - retro_shar_113 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.78 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMADEISKAQTAQPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDVCPQAPTHFLVIPKKPITQISVAEDDD
M.DEISK.......GD.IFG.IIRKE.PA.IIFEDD.C.AFHD.CPQAP.HFLV.P.KPI.QIS..EDDD
RetrocopyMTDEISKPHCTHRRGDSIFGRIIRKEVPANIIFEDDLCVAFHDACPQAPIHFLVVPRKPIMQISLTEDDD
ParentalENLLGHLMIVGKKCAADLGLKKGYRMVINEGADGGQSVYHIHLHVLGGRQMKWPPG
E.LLGHL.IVGKKCA...GLKKGYRMVINEGADGGQ.V.HIHLHVLGGRQMKWPPG
RetrocopyERLLGHLIIVGKKCANAMGLKKGYRMVINEGADGGQTVFHIHLHVLGGRQMKWPPG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_113 was not experimentally validated.

Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 26 parental genes, and 59 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000177744 retrocopies
Bos taurus ENSBTAG000000109595 retrocopies
Canis familiaris ENSCAFG000000321521 retrocopy
Callithrix jacchus ENSCJAG000000143983 retrocopies
Equus caballus ENSECAG000000231803 retrocopies
Erinaceus europaeus ENSEEUG000000081751 retrocopy
Echinops telfairi ENSETEG000000101271 retrocopy
Homo sapiens ENSG000001695671 retrocopy
Gorilla gorilla ENSGGOG000000119671 retrocopy
Macropus eugenii ENSMEUG000000053682 retrocopies
Myotis lucifugus ENSMLUG000000010912 retrocopies
Macaca mulatta ENSMMUG000000099852 retrocopies
Monodelphis domestica ENSMODG000000287273 retrocopies
Mustela putorius furoENSMPUG000000116394 retrocopies
Mus musculus ENSMUSG000000202671 retrocopy
Nomascus leucogenys ENSNLEG000000124311 retrocopy
Oryctolagus cuniculus ENSOCUG000000066075 retrocopies
Otolemur garnettii ENSOGAG000000088502 retrocopies
Procavia capensis ENSPCAG000000047371 retrocopy
Pongo abelii ENSPPYG000000157472 retrocopies
Pan troglodytes ENSPTRG000000172061 retrocopy
Rattus norvegicus ENSRNOG000000006221 retrocopy
Sarcophilus harrisii ENSSHAG00000005834 2 retrocopies
retro_shar_113 , retro_shar_301,
Sus scrofa ENSSSCG000000142642 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000279204 retrocopies
Tursiops truncatus ENSTTRG000000086534 retrocopies



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