RetrogeneDB ID: | retro_cfam_1382 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 3:55024004..55024466(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000013213 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN5 | ||
Ensembl ID: | ENSCAFG00000007016 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris prefoldin subunit 5 (PFDN5), mRNA. [Source:RefSeq mRNA;Acc:NM_001251949] |
Percent Identity: | 98.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAQSVNITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLHVLNKNNEGKELLVPLTSSM |
M.QSVNITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLHVLNKNNEGKELLVPLTSSM | |
Retrocopy | MTQSVNITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLHVLNKNNEGKELLVPLTSSM |
Parental | YVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQ |
YVP.KLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQ | |
Retrocopy | YVPEKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQ |
Parental | QLTALGATQATAKA |
QLTALGATQATAKA | |
Retrocopy | QLTALGATQATAKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .29 RPM | 63 .38 RPM |
SRP017611_brain | 0 .24 RPM | 31 .60 RPM |
SRP017611_kidney | 0 .66 RPM | 123 .42 RPM |
SRP017611_liver | 0 .15 RPM | 45 .10 RPM |