RetrogeneDB ID: | retro_cfam_919 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:9263322..9263709(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN5 | ||
Ensembl ID: | ENSCAFG00000007016 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris prefoldin subunit 5 (PFDN5), mRNA. [Source:RefSeq mRNA;Acc:NM_001251949] |
Percent Identity: | 93.8 % |
Parental protein coverage: | 83.77 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MAQSVNITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLHVLNKNNEGKELLVPLTSSM |
M..SVNITELNLPQLEMLKNQLDQEV.FLSTSIAQLKVVQTK.VEAKDCLHVLNKNN.GK.L.VPLTSSM | |
Retrocopy | MV*SVNITELNLPQLEMLKNQLDQEVGFLSTSIAQLKVVQTK*VEAKDCLHVLNKNN*GKDLFVPLTSSM |
Parental | YVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQ |
YVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFL.KQMEKIQPALQEKHAMKQ | |
Retrocopy | YVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLMKQMEKIQPALQEKHAMKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 63 .38 RPM |
SRP017611_brain | 0 .00 RPM | 31 .60 RPM |
SRP017611_kidney | 0 .00 RPM | 123 .42 RPM |
SRP017611_liver | 0 .00 RPM | 45 .10 RPM |