RetrogeneDB ID: | retro_fcat_828 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:41916432..41916748(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN5 | ||
Ensembl ID: | ENSFCAG00000005871 | ||
Aliases: | None | ||
Description: | prefoldin subunit 5 [Source:HGNC Symbol;Acc:8869] |
Percent Identity: | 76.42 % |
Parental protein coverage: | 65.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVL-NKNNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGY |
LDQE.EFL.TSIAQLKV.QTK.VEA.D.LN.L.NKNNEG.ELL.PL.SSMYV.G..HDVEHVLIDVG.GY | |
Retrocopy | LDQELEFLPTSIAQLKVGQTKDVEAADYLNML>NKNNEGEELLLPLMSSMYVLGR*HDVEHVLIDVGRGY |
Parental | YVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHA |
YVEKTAED..D..KRKI.FLT.Q.E.I.PALQ.KHA | |
Retrocopy | YVEKTAEDFRDSLKRKIEFLTSQLEEIEPALQGKHA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .87 RPM |
SRP017611_kidney | 0 .10 RPM | 102 .44 RPM |
SRP017611_liver | 0 .00 RPM | 32 .05 RPM |