RetrogeneDB ID: | retro_cjac_993 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 12:82827134..82827593(+) | ||
Located in intron of: | ENSCJAG00000016232 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000018477 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.73 % |
Parental protein coverage: | 99.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AQSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMY |
AQ.INITELNLPQLEMLKN.LDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMY | |
Retrocopy | AQLINITELNLPQLEMLKNALDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMY |
Parental | VPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQ |
VPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRK.DFLTKQMEKIQP.LQEKHAMKQAVMEMMSQKIQQ | |
Retrocopy | VPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKTDFLTKQMEKIQPVLQEKHAMKQAVMEMMSQKIQQ |
Parental | LTALGAAQATAKA |
LTALGAAQ.TAKA | |
Retrocopy | LTALGAAQVTAKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .49 RPM | 22 .54 RPM |
SRP051959_heart | 0 .44 RPM | 31 .05 RPM |
SRP051959_kidney | 0 .42 RPM | 47 .57 RPM |
SRP051959_liver | 0 .45 RPM | 31 .43 RPM |
SRP051959_lung | 0 .86 RPM | 45 .04 RPM |
SRP051959_lymph_node | 0 .68 RPM | 64 .95 RPM |
SRP051959_skeletal_muscle | 0 .17 RPM | 27 .01 RPM |
SRP051959_spleen | 1 .39 RPM | 53 .28 RPM |