RetrogeneDB ID: | retro_cjac_1707 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 19:31440423..31440738(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000014863 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000018477 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.67 % |
Parental protein coverage: | 68.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQP |
LN.L.KSNEG.ELL.PLTSSMYVP.KLHDVEHVLIDVGT.Y.VEK.AEDAKDFFKRK.DFLT.QMEKIQP | |
Retrocopy | LNMLTKSNEGRELLIPLTSSMYVPEKLHDVEHVLIDVGTVYHVEKIAEDAKDFFKRKTDFLTNQMEKIQP |
Parental | ALQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA |
AL.EKHAMKQAVMEMMSQKIQQL.ALGAAQ.TA.A | |
Retrocopy | ALREKHAMKQAVMEMMSQKIQQLRALGAAQDTAMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 22 .54 RPM |
SRP051959_heart | 0 .00 RPM | 31 .05 RPM |
SRP051959_kidney | 0 .00 RPM | 47 .57 RPM |
SRP051959_liver | 0 .04 RPM | 31 .43 RPM |
SRP051959_lung | 0 .02 RPM | 45 .04 RPM |
SRP051959_lymph_node | 0 .00 RPM | 64 .95 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 27 .01 RPM |
SRP051959_spleen | 0 .00 RPM | 53 .28 RPM |