RetrogeneDB ID: | retro_fcat_1566 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:79991835..79992109(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN5 | ||
Ensembl ID: | ENSFCAG00000005871 | ||
Aliases: | None | ||
Description: | prefoldin subunit 5 [Source:HGNC Symbol;Acc:8869] |
Percent Identity: | 88.04 % |
Parental protein coverage: | 56.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQA |
ELLVP..SSMYVPGKLHDVEHVLIDVGTGYY.EKTAEDAK.FFKRK.DFLTKQMEK.QPALQEKHA..QA | |
Retrocopy | ELLVPVKSSMYVPGKLHDVEHVLIDVGTGYYIEKTAEDAKGFFKRKMDFLTKQMEKMQPALQEKHATSQA |
Parental | VMEMMSQKIQQLTAL-GATQAT |
.MEMMSQK.QQLTAL.GATQAT | |
Retrocopy | AMEMMSQKRQQLTAL>GATQAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .87 RPM |
SRP017611_kidney | 0 .00 RPM | 102 .44 RPM |
SRP017611_liver | 0 .00 RPM | 32 .05 RPM |