RetrogeneDB ID: | retro_cpor_1334 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_7:19012515..19012742(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSCPOG00000021695 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.64 % |
Parental protein coverage: | 57.69 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | DHRAGKIVVNLTGRLNKCGVISPRFDVQ-LKDLEKWQNNLLPSRQFGFIVLTTSAGIMD-HEEARRKHTG |
D.RA.K.VVNLTGRLN.C..ISPRF.VQ......K......P..Q.GFI.LTTSAGIMD..E.AR.KHT. | |
Retrocopy | DNRAEKTVVNLTGRLNQCRGISPRFAVQPTQRF*KMAEQSAPFHQLGFIALTTSAGIMD<CEVARPKHTE |
Parental | GKILGFF |
GKILGFF | |
Retrocopy | GKILGFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 59 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 116 .52 RPM |
SRP017611_liver | 0 .00 RPM | 81 .96 RPM |
SRP040447_lung | 0 .00 RPM | 209 .71 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 193 .63 RPM |