RetrogeneDB ID: | retro_itri_1037 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393360.1:5418494..5418851(-) | ||
Located in intron of: | ENSSTOG00000015714 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSSTOG00000025222 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 76.47 % |
Parental protein coverage: | 91.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLN |
.V.MNV.A.ALKSINNA.KR...QVLIRPCSKVIV.FLTVMMKH.Y.GE.EI.D.HRA.KIVVN..GRLN | |
Retrocopy | VVCMNVQAHALKSINNAKKRDEHQVLIRPCSKVIVQFLTVMMKHAYTGESEITDNHRAQKIVVNPKGRLN |
Parental | KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRK |
.CGVISPR.DVQLKDLEKWQNNLLP..Q..FI.LTTSAGIMD.E..R.K | |
Retrocopy | QCGVISPRSDVQLKDLEKWQNNLLPFCQCSFILLTTSAGIMDYEVSRQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |