Parental gene:

RPS15A, ENSPPYG00000007139

Aliases:None
Description:40S ribosomal protein S15a [Source:RefSeq peptide;Acc:NP_001126001]
Organism:Orangutan (Pongo abelii)
Coordinates:16:18302889..18310224(-)


>ENSPPYG00000007139
ATGGTGCGCATGAATGTCCTGGCAGATGCTCTCAAGAGCATCAACAATGCCGAAAAGAGAGGCAAACGCCAGGTGCTTAT
TAGGCCGTGCTCCAAAGTCATCGTCCGGTTTCTCACTGTGATGATGAAGCATGGTTACATTGGCGAATTTGAAATCATTG
ATGACCACAGAGCTGGGAAAATTGTTGTGAACCTCACAGGCAGGCTAAACAAGTGTGGGGTGATCAGCCCCAGATTTGAC
GTGCAACTCAAAGACCTGGAAAAATGGCAGAATAATCTGCTTCCATCTCGCCAGTTTGGTTTCATTGTACTGACAACCTC
AGCTGGCATCATGGACCATGAAGAAGCAAGACGAAAACACACAGGAGGGAAAATCCTGGGATTCTTCTTCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 27 .76 RPM
SRP007412_cerebellum 31 .37 RPM
SRP007412_heart 69 .36 RPM
SRP007412_kidney 97 .12 RPM
SRP007412_liver 121 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011083 ortholog_one2one 18 retrogenes
Bos taurus ENSBTAG00000020733 possible_ortholog 5 retrogenes
Callithrix jacchus ENSCJAG00000020071 ortholog_one2many 6 retrogenes
Cavia porcellus ENSCPOG00000021695 ortholog_one2one 12 retrogenes
Dasypus novemcinctus ENSDNOG00000008341 ortholog_one2one 45 retrogenes
Dipodomys ordii ENSDORG00000001557 ortholog_one2one 5 retrogenes
Equus caballus ENSECAG00000019293 ortholog_one2one 2 retrogenes
Homo sapiens ENSG00000134419 ortholog_one2one 37 retrogenes
Gorilla gorilla ENSGGOG00000026299 ortholog_one2one 32 retrogenes
Gadus morhua ENSGMOG00000005862 ortholog_many2many 1 retrogene
Latimeria chalumnae ENSLACG00000011476 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000026996 ortholog_one2many 13 retrogenes
Microcebus murinus ENSMICG00000012241 ortholog_one2one 20 retrogenes
Macaca mulatta ENSMMUG00000005593 ortholog_one2one 3 retrogenes
Oryctolagus cuniculus ENSOCUG00000000179 ortholog_one2one 25 retrogenes
Otolemur garnettii ENSOGAG00000013199 ortholog_one2one 14 retrogenes
Pan troglodytes ENSPTRG00000007823 ortholog_one2one 2 retrogenes
Pteropus vampyrus ENSPVAG00000002901 ortholog_one2one 14 retrogenes
Rattus norvegicus ENSRNOG00000018320 possible_ortholog 5 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000025222 ortholog_one2one 26 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_34 86.92 100.00
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2. retro_pabe_2008 79.79 70.00
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Download FASTA sequences of all ENSPPYG00000007139 retrocopies