RetrogeneDB ID: | retro_cpor_403 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_14:41783943..41784221(-) | ||
Located in intron of: | ENSCPOG00000015578 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSCPOG00000021695 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.95 % |
Parental protein coverage: | 72.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISP-RFDVQLKDLEKWQNNLLPSRQFGFIVLT |
FLT.M.KH.Y.G.FEI.DDHRA.KI..NLTGRLNK..VI.P.RFDVQ..DLE.WQ.NLLPSRQFGFIVLT | |
Retrocopy | FLTMMRKHAYTGAFEIFDDHRARKIL-NLTGRLNKRSVIGP<RFDVQVEDLEAWQDNLLPSRQFGFIVLT |
Parental | TSAGIMDHEEARRKHTGGKILGFFF |
TSA.IMDHEEA.RKHTG.KILGFFF | |
Retrocopy | TSADIMDHEEAPRKHTGEKILGFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .35 RPM | 59 .47 RPM |
SRP017611_kidney | 0 .63 RPM | 116 .52 RPM |
SRP017611_liver | 0 .17 RPM | 81 .96 RPM |
SRP040447_lung | 0 .76 RPM | 209 .71 RPM |
SRP040447_skeletal_muscle | 0 .13 RPM | 193 .63 RPM |