Parental gene:

RPS15A, ENSPVAG00000002901

Aliases:None
Description:ribosomal protein S15a [Source:HGNC Symbol;Acc:10389]
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1574:7540..12591(-)


>ENSPVAG00000002901
ATGGTGCGCATGAACGTCCTGGCCGACGCACTCAAGAGCATCAACAATGCTGAAAAGAGAGGCAAACGCCAGGTTCTCAT
TAGGCCGTGCTCCAAAGTCATCGTCCGGTTTCTGACTGTGATGATGAAGCATGGTTACATTGGCGAATTTGAAATCATCG
ATGATCACAGAGCTGGGAAAATTGTTGTGAACCTCACAGGCAGGTTAAACAAGTGTGGAGTGATCAGCCCCAGATTCGAC
GTGCAACTCAAAGATCTAGAAAAATGGCAGAACAACTTGCTCCCGTCCCGTCAGTTTGGTTTCATTGTACTGACAACTTC
AGCGGGCATCATGGACCATGAAGAAGCAAGACGAAAACACACAGGAGGGAAAATCCTGGGATTCTTTTTCTAG

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011083 ortholog_one2one 18 retrogenes
Bos taurus ENSBTAG00000020733 possible_ortholog 5 retrogenes
Callithrix jacchus ENSCJAG00000020071 ortholog_one2many 6 retrogenes
Cavia porcellus ENSCPOG00000021695 ortholog_one2one 12 retrogenes
Dasypus novemcinctus ENSDNOG00000008341 ortholog_one2one 45 retrogenes
Dipodomys ordii ENSDORG00000001557 ortholog_one2one 5 retrogenes
Equus caballus ENSECAG00000019293 ortholog_one2one 2 retrogenes
Homo sapiens ENSG00000134419 ortholog_one2one 37 retrogenes
Gorilla gorilla ENSGGOG00000026299 ortholog_one2one 32 retrogenes
Gadus morhua ENSGMOG00000005862 ortholog_one2many 1 retrogene
Latimeria chalumnae ENSLACG00000011476 ortholog_one2one 1 retrogene
Loxodonta africana ENSLAFG00000026996 ortholog_one2one 13 retrogenes
Microcebus murinus ENSMICG00000012241 ortholog_one2one 20 retrogenes
Macaca mulatta ENSMMUG00000005593 ortholog_one2one 3 retrogenes
Oryctolagus cuniculus ENSOCUG00000000179 ortholog_one2one 25 retrogenes
Otolemur garnettii ENSOGAG00000013199 ortholog_one2one 14 retrogenes
Pongo abelii ENSPPYG00000007139 ortholog_one2one 2 retrogenes
Pan troglodytes ENSPTRG00000007823 ortholog_one2one 2 retrogenes
Rattus norvegicus ENSRNOG00000018320 possible_ortholog 5 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000025222 ortholog_one2one 26 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_50 78.26 69.23
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2. retro_pvam_102 67.02 71.54
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3. retro_pvam_344 78.63 100.00
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4. retro_pvam_362 86.92 100.00
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5. retro_pvam_364 70.73 60.77
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6. retro_pvam_381 69.37 83.85
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7. retro_pvam_383 71.30 86.15
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8. retro_pvam_494 88.55 100.00
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9. retro_pvam_573 71.90 92.31
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10. retro_pvam_834 75.00 93.85
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11. retro_pvam_943 88.00 76.92
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12. retro_pvam_1132 63.75 61.54
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13. retro_pvam_1238 87.69 100.00
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14. retro_pvam_1341 89.16 63.85
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Download FASTA sequences of all ENSPVAG00000002901 retrocopies