RetrogeneDB ID: | retro_dnov_505 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_5415:140222..140608(-) | ||
Located in intron of: | ENSDNOG00000002694 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSDNOG00000008341 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 84.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK-IVVNLTGRL |
MVRMNVLADA.KSI...EKRGK.QVLI.PCSKVIVRFLTVM.KHGYIG.FE.IDDHRAGK.IVVNL.GRL | |
Retrocopy | MVRMNVLADAHKSISSVEKRGKCQVLIGPCSKVIVRFLTVMKKHGYIGKFEMIDDHRAGK<IVVNLAGRL |
Parental | NKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF |
NKCGVISPRFDVQLKDLEK..NNLLPS.QFGFIVL.TSAGI.D..EAR.KHTGG.ILGFFF | |
Retrocopy | NKCGVISPRFDVQLKDLEK-*NNLLPSCQFGFIVLMTSAGITDYKEARQKHTGGIILGFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 146 .24 RPM |
SRP012922_cerebellum | 0 .14 RPM | 57 .32 RPM |
SRP012922_heart | 0 .00 RPM | 78 .19 RPM |
SRP012922_kidney | 0 .27 RPM | 165 .10 RPM |
SRP012922_liver | 0 .15 RPM | 76 .32 RPM |
SRP012922_lung | 0 .76 RPM | 224 .05 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 94 .16 RPM |
SRP012922_spleen | 0 .46 RPM | 232 .70 RPM |