Parental gene:

RPS15A, ENSGGOG00000026299

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:16:19323585..19331050(-)


>ENSGGOG00000026299
ATGGTGCGCATGAATGTCCTGGCAGATGCTCTCAAGAGCATCAACAATGCCGAAAAGAGAGGCAAGCGCCAGGTGCTTAT
TAGGCCGTGCTCCAAAGTCATCGTCCGGTTTCTCACTGTGATGATGAAGCATGGTTACATTGGCGAATTTGAAATCATTG
ATGACCACAGAGCTGGGAAAATTGTTGTGAACCTCACAGGCAGGCTAAACAAGTGTGGGGTGATCAGCCCCAGATTTGAC
GTGCAACTCAAAGACCTGGAAAAATGGCAGAATAATCTGCTTCCATCCCGCCAGTTTGGTTTCATTGTACTGACAACCTC
AGCTGGCATTATGGACCATGAAGAAGCAAGACGAAAACACACAGGAGGGAAAATCCTGGGATTCTTTTTCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 45 .56 RPM
SRP007412_cerebellum 56 .77 RPM
SRP007412_heart 48 .53 RPM
SRP007412_kidney 183 .39 RPM
SRP007412_liver 220 .31 RPM
SRP007412_testis 121 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011083 ortholog_one2one 18 retrogenes
retro_amel_106, retro_amel_123, retro_amel_1489, retro_amel_1572, retro_amel_1575, retro_amel_1708, retro_amel_1770, retro_amel_1894, retro_amel_245, retro_amel_271, retro_amel_319, retro_amel_438, retro_amel_442, retro_amel_603, retro_amel_648, retro_amel_66, retro_amel_766, retro_amel_96,
Bos taurus ENSBTAG00000020733 possible_ortholog 5 retrogenes
retro_btau_14, retro_btau_171, retro_btau_3, retro_btau_57, retro_btau_98,
Callithrix jacchus ENSCJAG00000020071 ortholog_one2many 6 retrogenes
retro_cjac_120, retro_cjac_128, retro_cjac_170, retro_cjac_231, retro_cjac_359, retro_cjac_80,
Cavia porcellus ENSCPOG00000021695 ortholog_one2one 12 retrogenes
retro_cpor_1031, retro_cpor_1087, retro_cpor_1103, retro_cpor_1334, retro_cpor_146, retro_cpor_403, retro_cpor_515, retro_cpor_557, retro_cpor_636, retro_cpor_730, retro_cpor_90, retro_cpor_926,
Dasypus novemcinctus ENSDNOG00000008341 ortholog_one2one 45 retrogenes
retro_dnov_1029, retro_dnov_1031, retro_dnov_1053, retro_dnov_1060, retro_dnov_1079, retro_dnov_1197, retro_dnov_1246, retro_dnov_147, retro_dnov_1598, retro_dnov_1738, retro_dnov_1766, retro_dnov_1794, retro_dnov_1954, retro_dnov_1963, retro_dnov_2002, retro_dnov_2012, retro_dnov_2047, retro_dnov_2119, retro_dnov_2155, retro_dnov_2182, retro_dnov_2206, retro_dnov_2326, retro_dnov_2338, retro_dnov_2355, retro_dnov_2401, retro_dnov_2437, retro_dnov_2458, retro_dnov_2478, retro_dnov_2479, retro_dnov_2492, retro_dnov_2516, retro_dnov_2519, retro_dnov_2655, retro_dnov_2669, retro_dnov_2689, retro_dnov_462, retro_dnov_494, retro_dnov_505, retro_dnov_629, retro_dnov_653, retro_dnov_667, retro_dnov_686, retro_dnov_774, retro_dnov_785, retro_dnov_87,
Dipodomys ordii ENSDORG00000001557 ortholog_one2one 5 retrogenes
retro_dord_165, retro_dord_455, retro_dord_496, retro_dord_51, retro_dord_582,
Equus caballus ENSECAG00000019293 ortholog_one2one 2 retrogenes
retro_ecab_114, retro_ecab_485,
Homo sapiens ENSG00000134419 ortholog_one2one 37 retrogenes
retro_hsap_1057, retro_hsap_1335, retro_hsap_1411, retro_hsap_1425, retro_hsap_164, retro_hsap_1695, retro_hsap_1769, retro_hsap_1932, retro_hsap_2020, retro_hsap_2087, retro_hsap_2117, retro_hsap_212, retro_hsap_2181, retro_hsap_2459, retro_hsap_2556, retro_hsap_2586, retro_hsap_3044, retro_hsap_3409, retro_hsap_3456, retro_hsap_351, retro_hsap_3514, retro_hsap_3539, retro_hsap_3590, retro_hsap_370, retro_hsap_374, retro_hsap_3904, retro_hsap_3987, retro_hsap_4033, retro_hsap_4071, retro_hsap_4300, retro_hsap_4802, retro_hsap_509, retro_hsap_629, retro_hsap_636, retro_hsap_685, retro_hsap_727, retro_hsap_861,
Gadus morhua ENSGMOG00000005862 ortholog_many2many 1 retrogene
retro_gmor_16,
Latimeria chalumnae ENSLACG00000011476 ortholog_one2many 1 retrogene
retro_lcha_55,
Loxodonta africana ENSLAFG00000026996 ortholog_one2many 13 retrogenes
retro_lafr_1161, retro_lafr_1201, retro_lafr_210, retro_lafr_236, retro_lafr_247, retro_lafr_309, retro_lafr_323, retro_lafr_356, retro_lafr_571, retro_lafr_613, retro_lafr_629, retro_lafr_759, retro_lafr_956,
Microcebus murinus ENSMICG00000012241 ortholog_one2one 20 retrogenes
retro_mmur_1007, retro_mmur_1051, retro_mmur_1112, retro_mmur_113, retro_mmur_1256, retro_mmur_1459, retro_mmur_1536, retro_mmur_185, retro_mmur_239, retro_mmur_250, retro_mmur_261, retro_mmur_297, retro_mmur_319, retro_mmur_486, retro_mmur_536, retro_mmur_570, retro_mmur_587, retro_mmur_772, retro_mmur_788, retro_mmur_984,
Macaca mulatta ENSMMUG00000005593 ortholog_one2one 3 retrogenes
retro_mmul_112, retro_mmul_293, retro_mmul_486,
Oryctolagus cuniculus ENSOCUG00000000179 ortholog_one2one 25 retrogenes
retro_ocun_1018, retro_ocun_1067, retro_ocun_1078, retro_ocun_1154, retro_ocun_1157, retro_ocun_1168, retro_ocun_1181, retro_ocun_1310, retro_ocun_1343, retro_ocun_1384, retro_ocun_1435, retro_ocun_144, retro_ocun_1600, retro_ocun_239, retro_ocun_253, retro_ocun_540, retro_ocun_559, retro_ocun_581, retro_ocun_587, retro_ocun_594, retro_ocun_634, retro_ocun_748, retro_ocun_780, retro_ocun_806, retro_ocun_92,
Otolemur garnettii ENSOGAG00000013199 ortholog_one2one 14 retrogenes
retro_ogar_102, retro_ogar_1254, retro_ogar_1302, retro_ogar_1361, retro_ogar_1636, retro_ogar_2241, retro_ogar_2361, retro_ogar_269, retro_ogar_2775, retro_ogar_3283, retro_ogar_3367, retro_ogar_563, retro_ogar_712, retro_ogar_87,
Pongo abelii ENSPPYG00000007139 ortholog_one2one 2 retrogenes
retro_pabe_2008, retro_pabe_34,
Pan troglodytes ENSPTRG00000007823 ortholog_one2one 2 retrogenes
retro_ptro_289, retro_ptro_76,
Pteropus vampyrus ENSPVAG00000002901 ortholog_one2one 14 retrogenes
retro_pvam_102, retro_pvam_1132, retro_pvam_1238, retro_pvam_1341, retro_pvam_344, retro_pvam_362, retro_pvam_364, retro_pvam_381, retro_pvam_383, retro_pvam_494, retro_pvam_50, retro_pvam_573, retro_pvam_834, retro_pvam_943,
Rattus norvegicus ENSRNOG00000018320 possible_ortholog 5 retrogenes
retro_rnor_1808, retro_rnor_2080, retro_rnor_2586, retro_rnor_324, retro_rnor_378,
Ictidomys tridecemlineatus ENSSTOG00000025222 ortholog_one2one 26 retrogenes
retro_itri_1013, retro_itri_1037, retro_itri_1092, retro_itri_1103, retro_itri_1213, retro_itri_1297, retro_itri_1407, retro_itri_1493, retro_itri_1504, retro_itri_1516, retro_itri_1726, retro_itri_205, retro_itri_255, retro_itri_443, retro_itri_452, retro_itri_475, retro_itri_491, retro_itri_498, retro_itri_536, retro_itri_624, retro_itri_692, retro_itri_716, retro_itri_829, retro_itri_839, retro_itri_844, retro_itri_927,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_85 88.46 100.00
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2. retro_ggor_109 82.95 99.23
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3. retro_ggor_248 76.19 63.85
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4. retro_ggor_283 78.74 97.69
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5. retro_ggor_340 82.19 56.15
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6. retro_ggor_365 78.79 72.31
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7. retro_ggor_384 96.18 100.00
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8. retro_ggor_466 82.19 56.15
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9. retro_ggor_469 92.31 100.00
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10. retro_ggor_551 72.09 99.23
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11. retro_ggor_557 85.38 99.23
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12. retro_ggor_558 85.38 99.23
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13. retro_ggor_588 88.55 100.00
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14. retro_ggor_614 84.78 70.77
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15. retro_ggor_835 65.59 68.46
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16. retro_ggor_1270 74.62 100.00
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17. retro_ggor_1406 95.89 56.15
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18. retro_ggor_1532 94.66 100.00
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19. retro_ggor_1599 82.65 75.38
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20. retro_ggor_1619 89.52 95.38
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21. retro_ggor_1631 75.79 70.00
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22. retro_ggor_1642 81.08 56.92
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23. retro_ggor_1728 84.85 100.00
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24. retro_ggor_2242 84.38 73.85
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25. retro_ggor_2332 90.84 100.00
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26. retro_ggor_2376 76.56 98.46
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27. retro_ggor_2390 90.59 65.38
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28. retro_ggor_2631 82.57 83.85
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29. retro_ggor_2706 94.62 100.00
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30. retro_ggor_2874 84.52 64.62
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31. retro_ggor_2989 85.61 100.00
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32. retro_ggor_3075 69.23 68.46
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Download FASTA sequences of all ENSGGOG00000026299 retrocopies