RetrogeneDB ID: | retro_cpor_617 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_20:5259781..5260324(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NACA2 | ||
Ensembl ID: | ENSCPOG00000012654 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.68 % |
Parental protein coverage: | 88.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SGTESDSDESVPELEEQDSTQASTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRV |
SG.E.DSDESVPELEEQ.STQA.TQQAQL.AAAEID.EPV.KAKQS.SEKKA.KAMSKL.L.Q.TGVTRV | |
Retrocopy | SGGEFDSDESVPELEEQYSTQATTQQAQLVAAAEIDKEPVCKAKQSQSEKKAWKAMSKLSLWQITGVTRV |
Parental | TIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQE |
TI.K.KNILF.ITKP..Y.SP.SDTYIVF.EAKI.DLSQQAQL.AAEK.KVQGEAV.NI.ENTQTPTVQ. | |
Retrocopy | TIWKPKNILFIITKPVLYRSPLSDTYIVFREAKIKDLSQQAQLTAAEKYKVQGEAV*NIHENTQTPTVQK |
Parental | ESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIM |
E....EVDETG.EVKDIELVMSQ....RAKAV.ALKNN.NDIVNA.M | |
Retrocopy | E----EVDETGMEVKDIELVMSQ--TKRAKAVQALKNNNNDIVNAVM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 117 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 233 .35 RPM |
SRP017611_liver | 0 .04 RPM | 158 .35 RPM |
SRP040447_lung | 0 .00 RPM | 179 .93 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 97 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004175 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000000141 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000010701 | 8 retrocopies | |
Cavia porcellus | ENSCPOG00000012654 | 3 retrocopies |
retro_cpor_1025, retro_cpor_1365, retro_cpor_617 ,
|
Loxodonta africana | ENSLAFG00000004598 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000001169 | 16 retrocopies | |
Pteropus vampyrus | ENSPVAG00000008015 | 8 retrocopies | |
Vicugna pacos | ENSVPAG00000004028 | 2 retrocopies |