RetrogeneDB ID: | retro_pvam_290 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_2374:109449..109772(+) | ||
Located in intron of: | ENSPVAG00000014030 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NACA | ||
Ensembl ID: | ENSPVAG00000008015 | ||
Aliases: | None | ||
Description: | nascent polypeptide-associated complex alpha subunit [Source:HGNC Symbol;Acc:7629] |
Percent Identity: | 74.77 % |
Parental protein coverage: | 51.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQALAAAAEIDEEPVSKAKQSR |
MPGEA..TVPA..Q..PQPQA.T.SG.E..SDESVPELEEQDST.ATTQ..LAAAAE..EEP.S.AKQS. | |
Retrocopy | MPGEAADTVPAAGQGFPQPQAVTESGIE--SDESVPELEEQDSTLATTQARLAAAAELNEEPLSTAKQSW |
Parental | SEKKAR-KAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDV |
.EKKAR.K..S.LGL.QVTGVTR.TI..SKNILFVITKPDV | |
Retrocopy | HEKKAR<KPTSRLGL*QVTGVTRATILESKNILFVITKPDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004175 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000000141 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000010701 | 8 retrocopies | |
Cavia porcellus | ENSCPOG00000012654 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000004598 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000001169 | 16 retrocopies | |
Pteropus vampyrus | ENSPVAG00000008015 | 8 retrocopies |
retro_pvam_1007, retro_pvam_1097, retro_pvam_1154, retro_pvam_1173, retro_pvam_1382, retro_pvam_1384, retro_pvam_290 , retro_pvam_580,
|
Vicugna pacos | ENSVPAG00000004028 | 2 retrocopies |