RetrogeneDB ID: | retro_vpac_485 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_2397:79031..79673(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSVPAG00000004028 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQTTTQQAQLAAAAEIDEEPVSKAKQS |
MP.EATETVPATEQELPQPQA.TGSGTES.S.ES.P.LEEQDSTQTTTQ.AQ.AAAAEIDEEPV.KAKQS | |
Retrocopy | MPSEATETVPATEQELPQPQAGTGSGTESNSGESLPQLEEQDSTQTTTQ-AQRAAAAEIDEEPVGKAKQS |
Parental | RSEKKAR----KLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAA |
.S.KK.R....KLGL.QVT..TRVT..KSKNI.FV.TK.DVYKSPASDT.IV.GEAKIEDLSQQAQLAAA | |
Retrocopy | QSVKKSRKAMSKLGL*QVTELTRVTTWKSKNIFFVFTKLDVYKSPASDTCIVLGEAKIEDLSQQAQLAAA |
Parental | EKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAI |
EKFKVQGEAVSNIQEN.QTPTVQEESEEEE.DETG.EVKDIELVMSQANVSRAKAV.ALKNNSNDIVNAI | |
Retrocopy | EKFKVQGEAVSNIQENPQTPTVQEESEEEEFDETGMEVKDIELVMSQANVSRAKAVGALKNNSNDIVNAI |
Parental | MELTM |
.ELTM | |
Retrocopy | TELTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |