RetrogeneDB ID:

retro_pvam_1007

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_22151:7755..8387(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSPVAG00000011386
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:NACA
Ensembl ID:ENSPVAG00000008015
Aliases:None
Description:nascent polypeptide-associated complex alpha subunit [Source:HGNC Symbol;Acc:7629]


Retrocopy-Parental alignment summary:






>retro_pvam_1007
ATGCCCGGTGAACCACAGAAACCGTCTCTATTACAGAGCAGGAGTTCCCATAGCCCTAGGCTGAGACAGGGTCTGGAACA
GAATCTAACAATGATGAATTAGTACCAGAGCTCTAGGAATAAGATTCCACACAGGCAACCACACAGGTCCAGCTGGCAGC
TGAAATGGATGAAGAATCAGTCAGTAAAGCAAAACAGAGCTGGAGTGAAAAAAAAGCACAGAAGTCTATGTCAAATCTGG
GTCTTCGAGAGGTTACAGGGGTGACTAGGGTCACTATCCAGAAATTTAAGAATATCCTCTTTGTCATCAAAAAACCAGAT
ATCTACGAGAGCCCAGCTTCACATATCTACATAGTTTGGGGAGAAGCCAAGATCAAGGATTTATCTCAGCAAACACAGCT
AGCAGCTGCTGAGAAATTAAAAGTTCAAGGTGAAGCTGTCTCAATCATTCAAGAAAACACACAGACTCCAATTATACAAG
AGGAGAGTGAAGAGGACGAGGTTAATGAAAAAGGTATGGAATTTAAGGACATACAATTGGTCATGTCACAAGCAAATGTG
TGCAGAGTGAAGGCAATCCAAGCCCTGAAGAACAATAATGATACTGTAAATGCTATTATGGAATTAACAATG

ORF - retro_pvam_1007 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.35 %
Parental protein coverage: 100. %
Number of stop codons detected: 4
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMPGE-ATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQALAAAAEIDEEPVSKAKQS
MPGE..TETV..TEQE.P.P.AETGSGTES..DE.VPEL.E.DSTQATTQ..LAA..E.DEE.VSKAKQS
RetrocopyMPGE<TTETVSITEQEFP*P*AETGSGTESNNDELVPEL*E*DSTQATTQVQLAA--EMDEESVSKAKQS
ParentalRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAA
.S...A.K.MS.LGLR.VTGVTRVTI.K.KNILFVI.KPD.Y.SPAS..YIV.GEAKI.DLSQQ.QLAAA
RetrocopyWSXXXAQKSMSNLGLREVTGVTRVTIQKFKNILFVIKKPDIYESPASHIYIVWGEAKIKDLSQQTQLAAA
ParentalEKFKVQGETVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAI
EK.KVQGE.VS.IQENTQTP..QEESEE.EV.E.G.E.KDI.LVMSQANV.R.KA..ALKNN.ND.VNAI
RetrocopyEKLKVQGEAVSIIQENTQTPIIQEESEEDEVNEKGMEFKDIQLVMSQANVCRVKAIQALKNN-NDTVNAI
ParentalMELTM
MELTM
RetrocopyMELTM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_1007 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 54 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000041753 retrocopies
Canis familiaris ENSCAFG000000001418 retrocopies
Callithrix jacchus ENSCJAG000000107018 retrocopies
Cavia porcellus ENSCPOG000000126543 retrocopies
Loxodonta africana ENSLAFG000000045986 retrocopies
Myotis lucifugus ENSMLUG0000000116916 retrocopies
Pteropus vampyrus ENSPVAG00000008015 8 retrocopies
Vicugna pacos ENSVPAG000000040282 retrocopies



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