RetrogeneDB ID: | retro_cjac_1063 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 12:107841325..107841766(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000010701 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.31 % |
Parental protein coverage: | 68.37 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQL |
KQS.SEKKA.KAMSKLGL.Q.TGVTRVTI.KSKNILF.ITKPDVYKSPA.DT.IV.GE.K.E.LSQQA.L | |
Retrocopy | KQSWSEKKAQKAMSKLGLGQITGVTRVTIWKSKNILFAITKPDVYKSPALDTHIVLGEDKNEGLSQQAEL |
Parental | AAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIV |
AAAEKFKVQG.A.SNI.E.TQ.PTV.EESEEEE.DETGVEVKD.ELVMSQAN..RAKAV.ALKNNSND.V | |
Retrocopy | AAAEKFKVQGKAISNI*EKTQAPTV*EESEEEEADETGVEVKDMELVMSQANALRAKAVQALKNNSNDTV |
Parental | NAIMELT |
NAIM.LT | |
Retrocopy | NAIMVLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 85 .98 RPM |
SRP051959_heart | 0 .00 RPM | 106 .61 RPM |
SRP051959_kidney | 0 .00 RPM | 124 .11 RPM |
SRP051959_liver | 0 .00 RPM | 152 .84 RPM |
SRP051959_lung | 0 .00 RPM | 113 .87 RPM |
SRP051959_lymph_node | 0 .00 RPM | 143 .83 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 47 .96 RPM |
SRP051959_spleen | 0 .00 RPM | 159 .29 RPM |