RetrogeneDB ID: | retro_cfam_2169 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:59486435..59486789(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NACA | ||
Ensembl ID: | ENSCAFG00000000141 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris nascent polypeptide-associated complex alpha subunit (NACA), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001252257] |
Percent Identity: | 78.51 % |
Parental protein coverage: | 56.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQS |
M.GEA..T.PATE.ELPQ.QAETGSGTE.D...SVPEL.EQDSTQ.TTQQAQ.AAAAEIDEEPV.KAKQS | |
Retrocopy | MYGEAIKTIPATE*ELPQLQAETGSGTEYDRYKSVPELKEQDSTQTTTQQAQVAAAAEIDEEPVRKAKQS |
Parental | RSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYI |
R.EKKA.KAM.KL.L.QV....RVTI.K.KNILFVITKPDVY.SPASDTYI | |
Retrocopy | RNEKKAWKAMFKLSLQQV---MRVTI*KYKNILFVITKPDVYNSPASDTYI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 186 .98 RPM |
SRP017611_brain | 0 .00 RPM | 59 .46 RPM |
SRP017611_kidney | 0 .00 RPM | 400 .58 RPM |
SRP017611_liver | 0 .00 RPM | 124 .00 RPM |