RetrogeneDB ID: | retro_cfam_1913 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 8:40952433..40953082(+) | ||
Located in intron of: | ENSCAFG00000016305 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NACA | ||
Ensembl ID: | ENSCAFG00000000141 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris nascent polypeptide-associated complex alpha subunit (NACA), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001252257] |
Percent Identity: | 84.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQS |
MPGEATETVPA.EQELPQPQ.ET.SGTESDSDESV.ELEEQDSTQATTQQAQLA.AA.IDE..VSKAK.. | |
Retrocopy | MPGEATETVPAAEQELPQPQTETRSGTESDSDESVLELEEQDSTQATTQQAQLATAAKIDEKTVSKAKPN |
Parental | RS-EKKARKA-MSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA |
R..E.K..K..MS.LGL.QVTG.TRVT..KS.NILF.ITKPDVYKSPASDTYIV.GEAKIEDLSQQAQLA | |
Retrocopy | RA>E*KGTKGYMSRLGLQQVTGLTRVTVQKSNNILFIITKPDVYKSPASDTYIVLGEAKIEDLSQQAQLA |
Parental | AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVN |
AAEKFKVQGEAVSNI.E.TQTPT.QEESEEEEVDE.GV..KD.ELVMSQANVSRAKAV.ALKNNSNDIVN | |
Retrocopy | AAEKFKVQGEAVSNI*EDTQTPTIQEESEEEEVDEMGVDIKDTELVMSQANVSRAKAV*ALKNNSNDIVN |
Parental | AIMELTM |
.IMELTM | |
Retrocopy | TIMELTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 186 .98 RPM |
SRP017611_brain | 0 .00 RPM | 59 .46 RPM |
SRP017611_kidney | 0 .07 RPM | 400 .58 RPM |
SRP017611_liver | 0 .07 RPM | 124 .00 RPM |