RetrogeneDB ID: | retro_amel_643 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192542.1:1952379..1953000(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000004175 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.91 % |
Parental protein coverage: | 96.28 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | TVPATEQELPQ-PQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEP-VSKAKQSRSEKK |
TVPATEQ..P..P....G..TES....SV.ELEEQDS.QA.T.Q.QLA.A.E.DE.....KAK..R.... | |
Retrocopy | TVPATEQQWPR>PGLRQGQ-TESGIGDSVSELEEQDSIQAST*QTQLAPAPEMDEPGRKNKAKKVRVKRS |
Parental | ARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY-IVFGEAKIEDLSQQAQLAAAEKFK |
..K.MSKL...QVT.VTRVTI.KS.N..FVI....VYKSPA.DT..I...EAK...LSQQA.LAAAEKFK | |
Retrocopy | QWKVMSKLSPPQVTEVTRVTIQKS*NVPFVIVRSYVYKSPALDTH>ILREEAKVRGLSQQA*LAAAEKFK |
Parental | VQGEAVSNIQE-NTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVR-ALKNNSNDIVNAIME |
VQGE.V.NIQE....TPT..EESEE.EV.ET.V....I.L..S.ANVS.AKA...AL.NNSN..V.AIME | |
Retrocopy | VQGEPVQNIQE<KRETPTASEESEEKEVKETDVDIWAIGLITSEANVSSAKAAK<ALRNNSNGLVAAIME |
Parental | LT |
LT | |
Retrocopy | LT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |