Parental gene:

ENSCJAG00000010701

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:45544767..45558648(-)


>ENSCJAG00000010701
ATGCCCGGTGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCGCAGCCCCAGGCTGAGACAGGATCTGGAAC
AGAATCTGATAGTGATGAATCAGTACCAGAGCTTGAAGAACAGGACTCCACCCAGGCAACCACACAACAAGCCCAGCTGG
CAGCAGCAGCTGAGATAGATGAAGAACCTGTCAGTAAAGCAAAACAAAGTCGAAGTGAAAAGAAGGCACGGAAGGCTATG
TCCAAACTGGGTCTTCGACAGGTTACAGGAGTTACTAGAGTCACTATCCGGAAATCTAAGAATATCCTCTTTGTCATCAC
AAAACCAGATGTCTACAAGAGCCCTGCTTCGGATACCTACATAGTATTTGGGGAAGCCAAGATCGAGGATTTATCTCAGC
AAGCACAACTGGCAGCTGCTGAGAAATTCAAAGTTCAAGGTGAAGCTGTCTCAAACATTCAAGAAAACACACAGACTCCA
ACTGTACAAGAGGAGAGTGAAGAGGAAGAGGTCGATGAAACAGGTGTAGAAGTTAAAGACATAGAATTGGTCATGTCACA
AGCAAATGTGTCCAGAGCAAAGGCAGTCCGAGCCCTGAAGAACAACAGTAATGATATTGTAAATGCTATTATGGAACTCC
TAACT

Library Parental gene expression (RPM)
SRP051959_spleen 159 .29 RPM
SRP051959_skeletal_muscle 47 .96 RPM
SRP051959_lymph_node 143 .83 RPM
SRP051959_lung 113 .87 RPM
SRP051959_liver 152 .84 RPM
SRP051959_kidney 124 .11 RPM
SRP051959_heart 106 .61 RPM
SRP051959_colon 85 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004175 possible_ortholog 3 retrogenes
retro_amel_1725, retro_amel_1821, retro_amel_643,
Bos taurus ENSBTAG00000010701 possible_ortholog 2 retrogenes
retro_btau_1237, retro_btau_1620,
Canis familiaris ENSCAFG00000000141 possible_ortholog 8 retrogenes
retro_cfam_1502, retro_cfam_1561, retro_cfam_1884, retro_cfam_1913, retro_cfam_2096, retro_cfam_2169, retro_cfam_710, retro_cfam_974,
Cavia porcellus ENSCPOG00000012654 ortholog_one2one 3 retrogenes
retro_cpor_1025, retro_cpor_1365, retro_cpor_617,
Dipodomys ordii ENSDORG00000014522 possible_ortholog 2 retrogenes
retro_dord_228, retro_dord_699,
Equus caballus ENSECAG00000015242 possible_ortholog 1 retrogene
retro_ecab_785,
Erinaceus europaeus ENSEEUG00000010458 possible_ortholog 5 retrogenes
retro_eeur_170, retro_eeur_207, retro_eeur_242, retro_eeur_334, retro_eeur_520,
Homo sapiens ENSG00000196531 possible_ortholog 6 retrogenes
retro_hsap_3006, retro_hsap_3027, retro_hsap_3968, retro_hsap_3992, retro_hsap_737, retro_hsap_77,
Loxodonta africana ENSLAFG00000004598 possible_ortholog 6 retrogenes
retro_lafr_1107, retro_lafr_113, retro_lafr_1251, retro_lafr_166, retro_lafr_491, retro_lafr_958,
Macropus eugenii ENSMEUG00000008412 possible_ortholog 3 retrogenes
retro_meug_1630, retro_meug_2063, retro_meug_2147,
Microcebus murinus ENSMICG00000016465 possible_ortholog 5 retrogenes
retro_mmur_1122, retro_mmur_450, retro_mmur_585, retro_mmur_684, retro_mmur_807,
Myotis lucifugus ENSMLUG00000001169 possible_ortholog 16 retrogenes
retro_mluc_1147, retro_mluc_1653, retro_mluc_1668, retro_mluc_1756, retro_mluc_1767, retro_mluc_1851, retro_mluc_1881, retro_mluc_1941, retro_mluc_2587, retro_mluc_2600, retro_mluc_414, retro_mluc_492, retro_mluc_526, retro_mluc_641, retro_mluc_725, retro_mluc_861,
Macaca mulatta ENSMMUG00000003073 possible_ortholog 4 retrogenes
retro_mmul_1233, retro_mmul_1933, retro_mmul_2066, retro_mmul_889,
Mus musculus ENSMUSG00000061315 possible_ortholog 1 retrogene
retro_mmus_968,
Nomascus leucogenys ENSNLEG00000017449 possible_ortholog 7 retrogenes
retro_nleu_1358, retro_nleu_20, retro_nleu_2522, retro_nleu_478, retro_nleu_754, retro_nleu_839, retro_nleu_941,
Ochotona princeps ENSOPRG00000001781 possible_ortholog 3 retrogenes
retro_opri_264, retro_opri_758, retro_opri_961,
Procavia capensis ENSPCAG00000007067 possible_ortholog 5 retrogenes
retro_pcap_150, retro_pcap_224, retro_pcap_282, retro_pcap_305, retro_pcap_324,
Pongo abelii ENSPPYG00000004670 possible_ortholog 6 retrogenes
retro_pabe_2507, retro_pabe_26, retro_pabe_3279, retro_pabe_633, retro_pabe_656, retro_pabe_764,
Pteropus vampyrus ENSPVAG00000008015 ortholog_one2one 8 retrogenes
retro_pvam_1007, retro_pvam_1097, retro_pvam_1154, retro_pvam_1173, retro_pvam_1382, retro_pvam_1384, retro_pvam_290, retro_pvam_580,
Sarcophilus harrisii ENSSHAG00000002175 possible_ortholog 1 retrogene
retro_shar_213,
Ictidomys tridecemlineatus ENSSTOG00000009028 possible_ortholog 1 retrogene
retro_itri_367,
Tursiops truncatus ENSTTRG00000002150 possible_ortholog 2 retrogenes
retro_ttru_1157, retro_ttru_760,
Vicugna pacos ENSVPAG00000004028 possible_ortholog 2 retrogenes
retro_vpac_485, retro_vpac_611,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1063 82.31 68.37
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2. retro_cjac_1452 64.79 97.67
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3. retro_cjac_1875 53.60 57.67
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4. retro_cjac_2202 57.64 65.58
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5. retro_cjac_2453 65.69 63.26
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6. retro_cjac_2696 97.18 99.07
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7. retro_cjac_2975 92.81 71.16
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8. retro_cjac_3232 96.30 100.00
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Download FASTA sequences of all ENSCJAG00000010701 retrocopies