RetrogeneDB ID: | retro_dord_288 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_977:79950..80362(-) | ||
Located in intron of: | ENSDORG00000000104 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rab5a | ||
Ensembl ID: | ENSDORG00000012429 | ||
Aliases: | None | ||
Description: | RAB5A, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:105926] |
Percent Identity: | 64.08 % |
Parental protein coverage: | 64.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MANRGATRPNGPNTGNKICQFKLV-LLGESAVGKSSLVLRFVKG-QFHEFQESTIGAAFLTQTVCLDDTT |
M.N.GATR.NG..T.NKI.Q..LV.LL.ES...KSSLV..FVKG..F..F..ST..AAFLTQ.V.LDD.. | |
Retrocopy | MSNQGATRRNGLKTENKIHQVELV>LLEESIAEKSSLVPCFVKG>NFMNFK-STTEAAFLTQSVSLDDPK |
Parental | VKFEIWD-TAGQERYHSLAPMYYRGAQAAIVVYDITNEES-FARAKNWVKELQRQASPNIVIALSGNKAD |
V.FEI.D...GQ..YHSLAPMY.R.AQAAIVVYDITNE.........W.KELQRQ.SPN.VIA..GNKAD | |
Retrocopy | VRFEIRDIVVGQKSYHSLAPMYCR-AQAAIVVYDITNESF<YKSXXXWTKELQRQSSPNTVIASLGNKAD |
Parental | LA |
LA | |
Retrocopy | LA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |