RetrogeneDB ID: | retro_amel_958 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192769.1:988970..989441(+) | ||
Located in intron of: | ENSAMEG00000006513 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB5A | ||
Ensembl ID: | ENSAMEG00000000954 | ||
Aliases: | None | ||
Description: | RAB5A, member RAS oncogene family [Source:HGNC Symbol;Acc:9783] |
Percent Identity: | 73.29 % |
Parental protein coverage: | 72.56 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG-AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI |
QTV.LDDTTVKFEI.D.A.QE.YHSLAPMYYRG...AA..V.DITN..S.ARAK...KEL..QA.PN.VI | |
Retrocopy | QTVSLDDTTVKFEIRDAANQEQYHSLAPMYYRG<TKAAMAVDDITNDKSSARAKKRIKELKKQADPNDVI |
Parental | ALSGNKADLANKRAVDFQEAQSY-ADDNS-LLFMETSAKTSMNVNE-IFMAIAKKLPKNEPQNPGANSAR |
ALSGNKAD.ANKRA..FQEA.S..AD....LL.ME.SAKTSMNVNE.IFMA.AKKLPKNE..NPGANSA. | |
Retrocopy | ALSGNKADPANKRAISFQEA*SFVADNSV>LLLME*SAKTSMNVNE>IFMATAKKLPKNE*LNPGANSAK |
Parental | GRGVD-LTEPTQPTRSQCCSN |
GRG....TEPTQPTRSQCC.N | |
Retrocopy | GRGAE<TTEPTQPTRSQCCDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |