RetrogeneDB ID: | retro_lafr_267 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_108:1955379..1956023(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB5A | ||
Ensembl ID: | ENSLAFG00000008321 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MANRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG-AAFLTQTVCLDDTTV |
.ANRGATRPNGPNTGNKICQFKLVLLGESAVG.SSLVLRFVKGQFHEFQE.TIG.AAFLTQTVCLDDTTV | |
Retrocopy | LANRGATRPNGPNTGNKICQFKLVLLGESAVGNSSLVLRFVKGQFHEFQERTIG<AAFLTQTVCLDDTTV |
Parental | KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN |
KFEIWDTA.QERYHSLAPMY.RGAQAAI.VYDITNEESFARAK.WVKELQRQASPNIVIALSGNKADLAN | |
Retrocopy | KFEIWDTAAQERYHSLAPMY*RGAQAAIFVYDITNEESFARAKDWVKELQRQASPNIVIALSGNKADLAN |
Parental | KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSTRGRGVDLTEPTQPTR |
KRAVDFQEAQSYADDNSLLF.ETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSTRG.GVDL.EPTQPTR | |
Retrocopy | KRAVDFQEAQSYADDNSLLFTETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSTRGKGVDLMEPTQPTR |
Parental | SQCCSN |
SQCCSN | |
Retrocopy | SQCCSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000954 | 1 retrocopy | |
Bos taurus | ENSBTAG00000046385 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003731 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005322 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000012429 | 1 retrocopy | |
Felis catus | ENSFCAG00000004455 | 2 retrocopies | |
Homo sapiens | ENSG00000144566 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015981 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008321 | 1 retrocopy |
retro_lafr_267 ,
|
Macaca mulatta | ENSMMUG00000006992 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000014793 | 2 retrocopies | |
Mus musculus | ENSMUSG00000017831 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003434 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000012200 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014074 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000014682 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000026229 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007642 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000001374 | 1 retrocopy |