Parental gene:

RAB5A, ENSCPOG00000005322

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_0:76911870..76945152(-)


>ENSCPOG00000005322
ATGGCTAATCGAGGAGCAACAAGACCTAATGGGCCAAATACTGGAAATAAAATATGCCAGTTCAAACTAGTACTTCTGGG
AGAGTCTGCTGTTGGCAAATCAAGCCTGGTGCTTCGTTTTGTGAAAGGCCAGTTTCATGAATTTCAAGAGAGTACCATTG
GGGGTGACTGCTTTTCTACTCAAACTGTGTGTCTTGATGACACAACAGTAAAGTTTGAAATATGGGATACAGCTGGTCAA
GAAAGATACCATAGTCTAGCACCAATGTACTACAGAGGAGCCCAAGCAGCCATAGTTGTATATGATATCACAAATGAGGA
ATCATTTGCAAGAGCAAAAAACTGGGTTAAAGAACTCCAGAGGCAAGCAAGTCCTAACATTGTAATAGCTTTATCGGGAA
ACAAGGCTGACCTAGCAAATAAAAGAGCTGTAGACTTCCAGGAAGCACAGTCCTATGCAGAGGACAACAGTTTATTATTC
ATGGAAACATCAGCTAAAACATCAATGAATGTAAATGAAATATTCATGGCAATAGCTAAAAAGTTGCCAAAGAACGAGCC
ACAGAATCCAGGAGCAAATTCTGCTAGAGGAAGAGGAGTAGACCTCACGGAACCTACACAGCCAACCAGAAGTCAGTGTT
GTAGTAACTAA

Library Parental gene expression (RPM)
SRP017611_brain 35 .32 RPM
SRP017611_kidney 30 .46 RPM
SRP017611_liver 23 .11 RPM
SRP040447_lung 21 .14 RPM
SRP040447_skeletal_muscle 8 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000954 ortholog_one2one 1 retrogene
retro_amel_958,
Bos taurus ENSBTAG00000046385 ortholog_one2one 1 retrogene
retro_btau_300,
Callithrix jacchus ENSCJAG00000003731 ortholog_one2many 1 retrogene
retro_cjac_3268,
Cavia porcellus ENSCPOG00000011190 within_species_paralog 2 retrogenes
retro_cpor_333, retro_cpor_473,
Dipodomys ordii ENSDORG00000012429 ortholog_one2one 1 retrogene
retro_dord_288,
Felis catus ENSFCAG00000004455 ortholog_one2one 2 retrogenes
retro_fcat_1349, retro_fcat_984,
Homo sapiens ENSG00000144566 ortholog_one2one 1 retrogene
retro_hsap_1074,
Gorilla gorilla ENSGGOG00000015981 ortholog_one2one 1 retrogene
retro_ggor_848,
Loxodonta africana ENSLAFG00000008321 ortholog_one2one 1 retrogene
retro_lafr_267,
Macaca mulatta ENSMMUG00000006992 ortholog_one2many 2 retrogenes
retro_mmul_227, retro_mmul_839,
Monodelphis domestica ENSMODG00000014793 ortholog_one2one 2 retrogenes
retro_mdom_1219, retro_mdom_1993,
Mus musculus ENSMUSG00000017831 ortholog_one2one 1 retrogene
retro_mmus_1645,
Nomascus leucogenys ENSNLEG00000003434 ortholog_one2one 1 retrogene
retro_nleu_2466,
Oryctolagus cuniculus ENSOCUG00000012200 ortholog_one2one 1 retrogene
retro_ocun_1034,
Pongo abelii ENSPPYG00000014074 ortholog_one2one 2 retrogenes
retro_pabe_3094, retro_pabe_894,
Pan troglodytes ENSPTRG00000014682 ortholog_one2one 1 retrogene
retro_ptro_731,
Ictidomys tridecemlineatus ENSSTOG00000026229 ortholog_one2one 1 retrogene
retro_itri_398,
Tarsius syrichta ENSTSYG00000007642 ortholog_one2one 3 retrogenes
retro_tsyr_1544, retro_tsyr_315, retro_tsyr_946,
Tursiops truncatus ENSTTRG00000001374 ortholog_one2one 1 retrogene
retro_ttru_949,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_219 65.84 73.61
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2. retro_cpor_1213 72.08 70.37
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Download FASTA sequences of all ENSCPOG00000005322 retrocopies