RetrogeneDB ID: | retro_ecab_402 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 17:67288131..67288638(+) | ||
Located in intron of: | ENSECAG00000014808 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000008548 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.19 % |
Parental protein coverage: | 75.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | QTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTL-VENKKAQLVVIA |
QT..QL.KLAHK..PE.KQEK.Q.LL..A..K...KG..P..RPPVL.AG.NT.TTL.VE..KA....IA | |
Retrocopy | QTSMQLFKLAHKCSPEIKQEK-QKLLSEARRKLPAKGTSPL-RPPVL*AGINTATTL<VESQKA----IA |
Parental | HD-VDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCT-TVAFTQVNSEDKGALAKLVEAIRTNY |
H...DP.E.V..LPALC..MGVP...IKGKA..G.LVH.KT.T.T..FTQVN.E.KG.L.KLVEA.RT.. | |
Retrocopy | HT<MDPNERVL-LPALCCNMGVP*FTIKGKATPGYLVHGKTST>TITFTQVNWEEKGTLTKLVEAVRTRC |
Parental | NDRYDEIRRHW-GGNVLGPKSVARIAKLE-KAKAKELATKLG |
N.RY..I..HW.GGN..GPKSVA.IAKLE..AKAKELATKLG | |
Retrocopy | NGRYNKIHHHW<GGNIRGPKSVALIAKLE<NAKAKELATKLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 1464 .41 RPM |
SRP021940_cerebellum | 0 .00 RPM | 484 .89 RPM |
SRP021940_embryo | 0 .00 RPM | 883 .51 RPM |
SRP021940_placental_villous | 0 .00 RPM | 564 .68 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 942 .79 RPM |
SRP021940_testis | 0 .00 RPM | 419 .47 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1229 |
Gorilla gorilla | retro_ggor_963 |