RetrogeneDB ID: | retro_btau_936 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 21:45233297..45233774(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7A | ||
Ensembl ID: | ENSBTAG00000011559 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:Q2TBQ5] |
Percent Identity: | 85.09 % |
Parental protein coverage: | 60.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAIL |
M.KGKKAKGKKVA.APAVVKKQEAKK.VNP.FEKRPKNFGIGQ.IQ.KR.LT.FVKWPRYI.LQ.QRAIL | |
Retrocopy | MLKGKKAKGKKVALAPAVVKKQEAKKGVNPFFEKRPKNFGIGQVIQLKRVLTCFVKWPRYIQLQQQRAIL |
Parental | YKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV |
YKRLKVPPA.NQ.TQALDRQTATQLLKL.HKY.PETKQE.KQRLLA..EKK.A.K...PTKRPPVLRAGV | |
Retrocopy | YKRLKVPPAVNQLTQALDRQTATQLLKLTHKYSPETKQETKQRLLAQEEKKTASK--LPTKRPPVLRAGV |
Parental | NTVTTLVENKKAQLVVIAHDV |
NTVTTLVENK.AQLVVIAHD. | |
Retrocopy | NTVTTLVENKNAQLVVIAHDM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 158 .18 RPM |
ERP005899_muscle | 0 .00 RPM | 1161 .94 RPM |
SRP017611_brain | 0 .00 RPM | 183 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 336 .25 RPM |
SRP017611_liver | 0 .00 RPM | 280 .21 RPM |
SRP030211_testis | 0 .05 RPM | 289 .24 RPM |