RetrogeneDB ID: | retro_hsap_3081 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:113709241..113709772(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000241741 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7A | ||
Ensembl ID: | ENSG00000148303 | ||
Aliases: | RPL7A, L7A, SURF3, TRUP | ||
Description: | ribosomal protein L7a [Source:HGNC Symbol;Acc:10364] |
Percent Identity: | 86.44 % |
Parental protein coverage: | 66.17 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | TATQLLK-LAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAH |
TA.QLL..L.........Q.K..RLLA.AEKKAAGKGDVPTKRPPVL.AGVNTVTTLVENKKAQLVVIA. | |
Retrocopy | TAKQLLSCLSWPTSTDQRQSKRRRLLAQAEKKAAGKGDVPTKRPPVL*AGVNTVTTLVENKKAQLVVIAP |
Parental | DVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDR |
DVDPIEL.VFLPALCRKM.VP.CIIK.KARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDR | |
Retrocopy | DVDPIELAVFLPALCRKMVVP*CIIKRKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDR |
Parental | YDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG |
YDEI.RHWGGN.LGPKSVARIAKLEKAKAKELATKLG | |
Retrocopy | YDEICRHWGGNILGPKSVARIAKLEKAKAKELATKLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .16 RPM | 630 .89 RPM |
bodymap2_adrenal | 0 .55 RPM | 818 .53 RPM |
bodymap2_brain | 0 .05 RPM | 138 .06 RPM |
bodymap2_breast | 0 .29 RPM | 428 .06 RPM |
bodymap2_colon | 0 .50 RPM | 800 .16 RPM |
bodymap2_heart | 0 .00 RPM | 174 .83 RPM |
bodymap2_kidney | 0 .14 RPM | 375 .99 RPM |
bodymap2_liver | 0 .15 RPM | 230 .18 RPM |
bodymap2_lung | 0 .33 RPM | 639 .05 RPM |
bodymap2_lymph_node | 0 .38 RPM | 731 .09 RPM |
bodymap2_ovary | 0 .54 RPM | 1017 .07 RPM |
bodymap2_prostate | 0 .57 RPM | 927 .73 RPM |
bodymap2_skeletal_muscle | 0 .42 RPM | 405 .24 RPM |
bodymap2_testis | 0 .21 RPM | 481 .94 RPM |
bodymap2_thyroid | 0 .36 RPM | 506 .97 RPM |
bodymap2_white_blood_cells | 0 .57 RPM | 875 .28 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_139012 | 486 libraries | 672 libraries | 649 libraries | 20 libraries | 2 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .36 RPM |
CEU_NA11843 | 0 .57 RPM |
CEU_NA11930 | 0 .65 RPM |
CEU_NA12004 | 0 .30 RPM |
CEU_NA12400 | 0 .63 RPM |
CEU_NA12751 | 0 .46 RPM |
CEU_NA12760 | 1 .57 RPM |
CEU_NA12827 | 0 .52 RPM |
CEU_NA12872 | 0 .54 RPM |
CEU_NA12873 | 0 .38 RPM |
FIN_HG00183 | 0 .55 RPM |
FIN_HG00277 | 0 .55 RPM |
FIN_HG00315 | 0 .44 RPM |
FIN_HG00321 | 0 .48 RPM |
FIN_HG00328 | 0 .38 RPM |
FIN_HG00338 | 0 .34 RPM |
FIN_HG00349 | 0 .97 RPM |
FIN_HG00375 | 0 .68 RPM |
FIN_HG00377 | 0 .45 RPM |
FIN_HG00378 | 0 .38 RPM |
GBR_HG00099 | 0 .35 RPM |
GBR_HG00111 | 0 .28 RPM |
GBR_HG00114 | 0 .32 RPM |
GBR_HG00119 | 0 .41 RPM |
GBR_HG00131 | 0 .63 RPM |
GBR_HG00133 | 0 .46 RPM |
GBR_HG00134 | 0 .26 RPM |
GBR_HG00137 | 0 .74 RPM |
GBR_HG00142 | 0 .56 RPM |
GBR_HG00143 | 0 .16 RPM |
TSI_NA20512 | 0 .40 RPM |
TSI_NA20513 | 0 .22 RPM |
TSI_NA20518 | 1 .05 RPM |
TSI_NA20532 | 0 .41 RPM |
TSI_NA20538 | 0 .37 RPM |
TSI_NA20756 | 0 .67 RPM |
TSI_NA20765 | 0 .27 RPM |
TSI_NA20771 | 0 .68 RPM |
TSI_NA20786 | 0 .55 RPM |
TSI_NA20798 | 0 .22 RPM |
YRI_NA18870 | 0 .58 RPM |
YRI_NA18907 | 0 .24 RPM |
YRI_NA18916 | 0 .25 RPM |
YRI_NA19093 | 0 .16 RPM |
YRI_NA19099 | 0 .27 RPM |
YRI_NA19114 | 0 .50 RPM |
YRI_NA19118 | 0 .37 RPM |
YRI_NA19213 | 0 .33 RPM |
YRI_NA19214 | 0 .10 RPM |
YRI_NA19223 | 0 .16 RPM |