RetrogeneDB ID: | retro_btau_564 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 14:63752257..63752728(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7A | ||
Ensembl ID: | ENSBTAG00000011559 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:Q2TBQ5] |
Percent Identity: | 71.07 % |
Parental protein coverage: | 59.02 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | TATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTK-RPPVLRAGVNTVTTLVENKKAQLVVIAH |
TA.QLLKLAHK.RPE.K.E.K..LLA.AE.K.AG.GDVPTK..PP...A...TV.TL.E.KKAQLVV.AH | |
Retrocopy | TARQLLKLAHKCRPEMK*ERKHKLLASAETKTAGQGDVPTK<EPPIF*ADFDTVPTLEESKKAQLVVVAH |
Parental | DVDPIELVVFLPALCRKMGVPYCIIKGKARLGRL-VHRKTCTTVAFTQVNSEDKSALAKLVEAIRTNYND |
D..PIELV.FLPALC.KMGVP.CIIK.K.RLGR..V......TVAFTQVNS.DK..LAKLVEAIRT.YND | |
Retrocopy | DMHPIELVGFLPALCCKMGVPSCIIKEKDRLGRV>VVHRKTCTVAFTQVNSQDKGTLAKLVEAIRTSYND |
Parental | RYDEIRRHWGGNVLGPKSV |
R.DEI..HWGGN.LGPKSV | |
Retrocopy | RNDEICHHWGGNFLGPKSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 158 .18 RPM |
ERP005899_muscle | 0 .00 RPM | 1161 .94 RPM |
SRP017611_brain | 0 .00 RPM | 183 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 336 .25 RPM |
SRP017611_liver | 0 .00 RPM | 280 .21 RPM |
SRP030211_testis | 0 .00 RPM | 289 .24 RPM |